Gene: CC00G52990 (Cyclotella cryptica)

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Gene Identifier
CC00G52990
Transcript Identifier
CC00G52990.1
Gene Type
Coding gene
Location
g090156_00086 : 17335-19521 : positive

Family Information

Homologous gene family
HOM02SEM002061
(32 genes in 25 species)
specific family
Orthologous gene family
ORTHO02SEM002598
(28 genes in 24 species)
specific family

Descriptions

eggnog_description
U4 U6.U5 trisnRNPassociated protein

Identifiers

Type Value
GeneNameg575.t1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
InterProprotein deubiquitination
GO:0000375
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions YFR005C
GO:0000245
IEA
PLAZA Integrative Orthologyspliceosomal complex assembly YFR005C
GO:0022613
IEA
PLAZA Integrative Orthologyribonucleoprotein complex biogenesis YFR005C
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing YFR005C
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing YFR005C
GO:0022618
IEA
PLAZA Integrative Orthologyribonucleoprotein complex assembly YFR005C
GO:0071826
IEA
PLAZA Integrative Orthologyribonucleoprotein complex subunit organization YFR005C
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization YFR005C
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process YFR005C
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process YFR005C
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process YFR005C
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process YFR005C
GO:0000398
IEA
PLAZA Integrative OrthologymRNA splicing, via spliceosome YFR005C
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process YFR005C
GO:0010467
IEA
PLAZA Integrative Orthologygene expression YFR005C
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YFR005C
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization YFR005C
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process YFR005C
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process YFR005C
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly YFR005C
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process YFR005C
GO:0034622
IEA
PLAZA Integrative Orthologycellular protein-containing complex assembly YFR005C
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis YFR005C
GO:0000377
IEA
PLAZA Integrative OrthologyRNA splicing, via transesterification reactions with bulged adenosine as nucleophile YFR005C
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly YFR005C
GO:0008380
IEA
PLAZA Integrative OrthologyRNA splicing YFR005C

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0036459
IEA
InterProthiol-dependent ubiquitinyl hydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000168883
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT4G22410
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPBC577.07
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPBC577.07
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000168883
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPBC577.07
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000168883
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000168883
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex ENSG00000168883
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000168883
GO:0030532
IEA
PLAZA Integrative Orthologysmall nuclear ribonucleoprotein complex ENSG00000168883
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex ENSG00000168883
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen ENSG00000168883
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC577.07
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000168883
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT4G22410
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000168883
GO:0005681
IEA
PLAZA Integrative Orthologyspliceosomal complex FBgn0030969
GO:0097525
IEA
PLAZA Integrative Orthologyspliceosomal snRNP complex ENSG00000168883
GO:0005829
IEA
EggNOGmappercytosol
GO:0097526
IEA
PLAZA Integrative Orthologyspliceosomal tri-snRNP complex ENSG00000168883
GO:0046540
IEA
PLAZA Integrative OrthologyU4/U6 x U5 tri-snRNP complex ENSG00000168883
GO:0071011
IEA
PLAZA Integrative Orthologyprecatalytic spliceosome FBgn0030969
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBC577.07
GO:0005623
IEA
PLAZA Integrative Orthologycell SPBC577.07
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBC577.07
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBC577.07
GO:0120114
IEA
PLAZA Integrative OrthologySm-like protein family complex ENSG00000168883
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBC577.07

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001607Zinc finger, UBP-type
IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR028889Ubiquitin specific protease domain

No MapMan annotations defined for this gene.
KeggID Description
K12847USP39, SAD1; U4/U6.U5 tri-snRNP-associated protein 2
No chloroplast target sequence found.