Gene: CC00G40480 (Cyclotella cryptica)

Overview top

Gene Identifier
CC00G40480
Transcript Identifier
CC00G40480.1
Gene Type
Coding gene
Location
g005682_00097 : 127-2570 : positive

Family Information

Homologous gene family
HOM02SEM000584
(68 genes in 24 species)
specific family
Orthologous gene family
ORTHO02SEM000898
(53 genes in 24 species)
specific family

Descriptions

eggnog_description
Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine (By similarity)

Identifiers

Type Value
GeneNameg21734.t1

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006281
IEA
InterProDNA repair
GO:0006284
IEA
InterProbase-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0097510
IEA
PLAZA Integrative Orthologybase-excision repair, AP site formation via deaminated base removal ENSG00000076248
GO:0019692
IEA
PLAZA Integrative Orthologydeoxyribose phosphate metabolic process ENSG00000076248
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process ENSG00000076248
GO:0044270
IEA
PLAZA Integrative Orthologycellular nitrogen compound catabolic process ENSG00000076248
GO:0006753
IEA
PLAZA Integrative Orthologynucleoside phosphate metabolic process ENSG00000076248
GO:0006796
IEA
PLAZA Integrative Orthologyphosphate-containing compound metabolic process ENSG00000076248
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification ENSG00000076248
GO:0006793
IEA
PLAZA Integrative Orthologyphosphorus metabolic process ENSG00000076248
GO:0009223
IEA
EggNOGmapperpyrimidine deoxyribonucleotide catabolic process
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process ENSG00000076248
GO:1901135
IEA
PLAZA Integrative Orthologycarbohydrate derivative metabolic process ENSG00000076248
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process ENSG00000076248
GO:1901136
IEA
PLAZA Integrative Orthologycarbohydrate derivative catabolic process ENSG00000076248
GO:0009264
IEA
PLAZA Integrative Orthologydeoxyribonucleotide catabolic process ENSG00000076248
GO:0055086
IEA
PLAZA Integrative Orthologynucleobase-containing small molecule metabolic process ENSG00000076248
GO:1901292
IEA
PLAZA Integrative Orthologynucleoside phosphate catabolic process ENSG00000076248
GO:0009262
IEA
PLAZA Integrative Orthologydeoxyribonucleotide metabolic process ENSG00000076248
GO:0072527
IEA
PLAZA Integrative Orthologypyrimidine-containing compound metabolic process ENSG00000076248
GO:0034404
IEA
PLAZA Integrative Orthologynucleobase-containing small molecule biosynthetic process ENSG00000076248
GO:0072529
IEA
PLAZA Integrative Orthologypyrimidine-containing compound catabolic process ENSG00000076248
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process ENSG00000076248
GO:0006304
IEA
PLAZA Integrative OrthologyDNA modification ENSG00000076248
GO:0009219
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleotide metabolic process ENSG00000076248
GO:0046434
IEA
PLAZA Integrative Orthologyorganophosphate catabolic process ENSG00000076248
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process ENSG00000076248
GO:0006220
IEA
PLAZA Integrative Orthologypyrimidine nucleotide metabolic process ENSG00000076248
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process ENSG00000076248
GO:1901565
IEA
PLAZA Integrative Orthologyorganonitrogen compound catabolic process ENSG00000076248
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process ENSG00000076248
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process ENSG00000076248
GO:1901361
IEA
PLAZA Integrative Orthologyorganic cyclic compound catabolic process ENSG00000076248
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process ENSG00000076248
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process ENSG00000076248
GO:0034655
IEA
PLAZA Integrative Orthologynucleobase-containing compound catabolic process ENSG00000076248
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process ENSG00000076248
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process ENSG00000076248
GO:0046700
IEA
PLAZA Integrative Orthologyheterocycle catabolic process ENSG00000076248
GO:0009166
IEA
PLAZA Integrative Orthologynucleotide catabolic process ENSG00000076248
GO:0046386
IEA
PLAZA Integrative Orthologydeoxyribose phosphate catabolic process ENSG00000076248
GO:0044283
IEA
PLAZA Integrative Orthologysmall molecule biosynthetic process ENSG00000076248
GO:0044281
IEA
PLAZA Integrative Orthologysmall molecule metabolic process ENSG00000076248
GO:0045008
IEA
EggNOGmapperdepyrimidination
GO:0009117
IEA
PLAZA Integrative Orthologynucleotide metabolic process ENSG00000076248
GO:0006244
IEA
EggNOGmapperpyrimidine nucleotide catabolic process
GO:0006285
IEA
PLAZA Integrative Orthologybase-excision repair, AP site formation ENSG00000076248
GO:0019439
IEA
PLAZA Integrative Orthologyaromatic compound catabolic process ENSG00000076248
GO:0019637
IEA
PLAZA Integrative Orthologyorganophosphate metabolic process ENSG00000076248
GO:0009394
IEA
PLAZA Integrative Orthology2'-deoxyribonucleotide metabolic process ENSG00000076248
GO:0043066
IEA
EggNOGmappernegative regulation of apoptotic process
GO:0016444
IEA
EggNOGmappersomatic cell DNA recombination
GO:0016447
IEA
EggNOGmappersomatic recombination of immunoglobulin gene segments
GO:0006308
IEA
EggNOGmapperDNA catabolic process
GO:0016446
IEA
EggNOGmappersomatic hypermutation of immunoglobulin genes

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004844
IEA
EggNOGmapperuracil DNA N-glycosylase activity
GO:0004844
IEA
InterProuracil DNA N-glycosylase activity
GO:0003684
IEA
InterProdamaged DNA binding
GO:0003906
IEA
InterProDNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0008270
IEA
InterProzinc ion binding
GO:0016799
IEA
InterProhydrolase activity, hydrolyzing N-glycosyl compounds
GO:0003676
IEA
InterPronucleic acid binding
GO:0019899
IEA
PLAZA Integrative Orthologyenzyme binding ENSG00000076248
GO:0043021
IEA
PLAZA Integrative Orthologyribonucleoprotein complex binding ENSG00000076248
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000076248
GO:0044877
IEA
PLAZA Integrative Orthologyprotein-containing complex binding ENSG00000076248
GO:0043024
IEA
PLAZA Integrative Orthologyribosomal small subunit binding ENSG00000076248

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
EggNOGmappermitochondrion
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000076248
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPCC1183.06
GO:0005622
IEA
PLAZA Integrative Orthologyintracellular SPCC1183.06
GO:0044424
IEA
PLAZA Integrative Orthologyintracellular part SPCC1183.06
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000076248
GO:0044464
IEA
PLAZA Integrative Orthologycell part SPCC1183.06
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000076248
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000076248
GO:0005654
IEA
EggNOGmappernucleoplasm
GO:0031981
IEA
EggNOGmappernuclear lumen
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPCC1183.06
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000076248
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPCC1183.06
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000076248
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPCC1183.06
GO:0005623
IEA
PLAZA Integrative Orthologycell SPCC1183.06
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPCC1183.06
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPCC1183.06
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPCC1183.06

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR002043Uracil-DNA glycosylase family 1
IPR005122Uracil-DNA glycosylase-like
IPR012319Formamidopyrimidine-DNA glycosylase, catalytic domain
IPR015886DNA glycosylase/AP lyase, H2TH DNA-binding
IPR010979Ribosomal protein S13-like, H2TH

No MapMan annotations defined for this gene.
KeggID Description
K03648UNG, UDG; uracil-DNA glycosylase [EC:3.2.2.27]
K11400ARP4; actin-related protein 4
No chloroplast target sequence found.