Gene: AT5G56680 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G56680
Transcript Identifier
AT5G56680.1
Gene Type
Coding gene
Location
5 : 22936645-22938841 : positive

Family Information

Homologous gene family
HOM02SEM000631
(65 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM000907
(53 genes in 26 species)
specific family

Descriptions

Description
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curated Summary
Encodes a putative cytosolic asparaginyl-tRNA synthetase.
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Identifiers

Type Value
uniprotQ9SW96
aliasEMBRYO DEFECTIVE 2755
aliasSYNC1 ARATH
aliasSYNC1
aliasEMB2755

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006421
IEA
InterProasparaginyl-tRNA aminoacylation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0046686
IEP
Gene Ontologyresponse to cadmium ion1 2
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy3 4 5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004816
IEA
InterProasparagine-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm6
GO:0005737
IEA
InterProcytoplasm
GO:0005829
IDA
Gene Ontologycytosol7 8
GO:0009507
IDA
Gene Ontologychloroplast9 10
GO:0005739
IDA
Gene Ontologymitochondrion9 10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009068S15/NS1, RNA-binding
IPR004522Asparagine-tRNA ligase
IPR000738WHEP-TRS domain
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR006195Aminoacyl-tRNA synthetase, class II
IPR012340Nucleic acid-binding, OB-fold

No MapMan annotations defined for this gene.
KeggID Description
K01893NARS, asnS; asparaginyl-tRNA synthetase [EC:6.1.1.22]
No chloroplast target sequence found.