Gene: AT5G54520 (Arabidopsis thaliana)

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Gene Identifier
AT5G54520
Transcript Identifier
AT5G54520.1
Gene Type
Coding gene
Location
5 : 22146781-22149089 : negative

Family Information

Homologous gene family
HOM02SEM001865
(33 genes in 25 species)
specific family
Orthologous gene family
ORTHO02SEM002225
(31 genes in 25 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
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Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process1
GO:0071704
IEA
PLAZA Homology (enrichment)organic substance metabolic process HOM02SEM001865
GO:0010467
IEA
PLAZA Homology (enrichment)gene expression HOM02SEM001865
GO:0006807
IEA
PLAZA Homology (enrichment)nitrogen compound metabolic process HOM02SEM001865
GO:0000375
IEA
PLAZA Homology (enrichment)RNA splicing, via transesterification reactions HOM02SEM001865
GO:0006725
IEA
PLAZA Homology (enrichment)cellular aromatic compound metabolic process HOM02SEM001865
GO:0009987
IEA
PLAZA Homology (enrichment)cellular process HOM02SEM001865
GO:0006139
IEA
PLAZA Homology (enrichment)nucleobase-containing compound metabolic process HOM02SEM001865
GO:0006397
IEA
PLAZA Homology (enrichment)mRNA processing HOM02SEM001865
GO:0006396
IEA
PLAZA Homology (enrichment)RNA processing HOM02SEM001865
GO:0008152
IEA
PLAZA Homology (enrichment)metabolic process HOM02SEM001865
GO:0090304
IEA
PLAZA Homology (enrichment)nucleic acid metabolic process HOM02SEM001865
GO:0034641
IEA
PLAZA Homology (enrichment)cellular nitrogen compound metabolic process HOM02SEM001865
GO:0016071
IEA
PLAZA Homology (enrichment)mRNA metabolic process HOM02SEM001865
GO:0016070
IEA
PLAZA Homology (enrichment)RNA metabolic process HOM02SEM001865
GO:0046483
IEA
PLAZA Homology (enrichment)heterocycle metabolic process HOM02SEM001865
GO:0043170
IEA
PLAZA Homology (enrichment)macromolecule metabolic process HOM02SEM001865
GO:0000398
IEA
PLAZA Homology (enrichment)mRNA splicing, via spliceosome HOM02SEM001865
GO:0000377
IEA
PLAZA Homology (enrichment)RNA splicing, via transesterification reactions with bulged adenosine as nucleophile HOM02SEM001865
GO:0044237
IEA
PLAZA Homology (enrichment)cellular metabolic process HOM02SEM001865
GO:0044238
IEA
PLAZA Homology (enrichment)primary metabolic process HOM02SEM001865
GO:1901360
IEA
PLAZA Homology (enrichment)organic cyclic compound metabolic process HOM02SEM001865
GO:0008380
IEA
PLAZA Homology (enrichment)RNA splicing HOM02SEM001865

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003674
ND
Gene Ontologymolecular_function1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex2 3 4 5
GO:0005834
ISS
Gene Ontologyheterotrimeric G-protein complex6
GO:0005634
ISM
Gene Ontologynucleus7
GO:0044446
IEA
PLAZA Homology (enrichment)intracellular organelle part HOM02SEM001865
GO:0044422
IEA
PLAZA Homology (enrichment)organelle part HOM02SEM001865
GO:0005681
IEA
PLAZA Homology (enrichment)spliceosomal complex HOM02SEM001865
GO:0044428
IEA
PLAZA Homology (enrichment)nuclear part HOM02SEM001865
GO:1990904
IEA
PLAZA Homology (enrichment)ribonucleoprotein complex HOM02SEM001865
GO:0071013
IEA
PLAZA Homology (enrichment)catalytic step 2 spliceosome HOM02SEM001865

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR001680WD40 repeat
IPR019775WD40 repeat, conserved site
IPR017986WD40-repeat-containing domain

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.