PLAZA diatoms 1.0 gene overview : AT5G52250

Gene: AT5G52250 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G52250
Transcript Identifier: AT5G52250.1
Gene Type: Coding gene
Location: 5 : 21216898-21218055 : positive

Family Information

Homologous gene family: HOM02SEM002253
(30 genes in 9 species)
specific family

Descriptions

Description: Transducin/WD40 repeat-like superfamily protein

Curated Summary: Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. Functions as a repressor of UV-B signaling.

Identifiers

Type	Value
uniprot	Q9LTJ6
alias	REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1
alias	RUP1
alias	EFO1
alias	EARLY FLOWERING BY OVEREXPRESSION 1

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0043496	IDA	Gene Ontology	regulation of protein homodimerization activity	1 2
GO:0010224	IGI, IEP	Gene Ontology	response to UV-B	3 4 5 6 7 8
GO:0010218	IEP	Gene Ontology	response to far red light	9 10
GO:0010114	IEP	Gene Ontology	response to red light	9 10
GO:1903362	IEA	PLAZA Integrative Orthology	regulation of cellular protein catabolic process	ENSG00000143207
GO:0036211	IEA	PLAZA Integrative Orthology	protein modification process	ENSG00000143207
GO:0061136	IEA	PLAZA Integrative Orthology	regulation of proteasomal protein catabolic process	ENSG00000143207
GO:1903364	IEA	PLAZA Integrative Orthology	positive regulation of cellular protein catabolic process	ENSG00000143207
GO:0042176	IEA	PLAZA Integrative Orthology	regulation of protein catabolic process	ENSG00000143207
GO:0051173	IEA	PLAZA Integrative Orthology	positive regulation of nitrogen compound metabolic process	ENSG00000143207
GO:0051171	IEA	PLAZA Integrative Orthology	regulation of nitrogen compound metabolic process	ENSG00000143207
GO:0044238	IEA	PLAZA Integrative Orthology	primary metabolic process	ENSG00000143207
GO:0048518	IEA	PLAZA Integrative Orthology	positive regulation of biological process	ENSG00000143207
GO:0044237	IEA	PLAZA Integrative Orthology	cellular metabolic process	ENSG00000143207
GO:0051246	IEA	PLAZA Integrative Orthology	regulation of protein metabolic process	ENSG00000143207
GO:0051247	IEA	PLAZA Integrative Orthology	positive regulation of protein metabolic process	ENSG00000143207
GO:0050794	IEA	PLAZA Integrative Orthology	regulation of cellular process	ENSG00000143207
GO:0048522	IEA	PLAZA Integrative Orthology	positive regulation of cellular process	ENSG00000143207
GO:0051603	IEA	PLAZA Integrative Orthology	proteolysis involved in cellular protein catabolic process	ENSG00000143207
GO:0010498	IEA	PLAZA Integrative Orthology	proteasomal protein catabolic process	ENSG00000143207
GO:0010212	IEA	PLAZA Integrative Orthology	response to ionizing radiation	ENSG00000143207
GO:1903052	IEA	PLAZA Integrative Orthology	positive regulation of proteolysis involved in cellular protein catabolic process	ENSG00000143207
GO:0008152	IEA	PLAZA Integrative Orthology	metabolic process	ENSG00000143207
GO:0045732	IEA	PLAZA Integrative Orthology	positive regulation of protein catabolic process	ENSG00000143207
GO:0043632	IEA	PLAZA Integrative Orthology	modification-dependent macromolecule catabolic process	ENSG00000143207
GO:0044248	IEA	PLAZA Integrative Orthology	cellular catabolic process	ENSG00000143207
GO:0043161	IEA	PLAZA Integrative Orthology	proteasome-mediated ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:0006807	IEA	PLAZA Integrative Orthology	nitrogen compound metabolic process	ENSG00000143207
GO:0016043	IEA	PLAZA Integrative Orthology	cellular component organization	AT5G23730
GO:0071840	IEA	PLAZA Integrative Orthology	cellular component organization or biogenesis	AT5G23730
GO:0032436	IEA	PLAZA Integrative Orthology	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:1903050	IEA	PLAZA Integrative Orthology	regulation of proteolysis involved in cellular protein catabolic process	ENSG00000143207
GO:0032434	IEA	PLAZA Integrative Orthology	regulation of proteasomal ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:0032270	IEA	PLAZA Integrative Orthology	positive regulation of cellular protein metabolic process	ENSG00000143207
GO:0019538	IEA	PLAZA Integrative Orthology	protein metabolic process	ENSG00000143207
GO:2000060	IEA	PLAZA Integrative Orthology	positive regulation of ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:0009893	IEA	PLAZA Integrative Orthology	positive regulation of metabolic process	ENSG00000143207
GO:0009057	IEA	PLAZA Integrative Orthology	macromolecule catabolic process	ENSG00000143207
GO:0009056	IEA	PLAZA Integrative Orthology	catabolic process	ENSG00000143207
GO:0006464	IEA	PLAZA Integrative Orthology	cellular protein modification process	ENSG00000143207
GO:1901565	IEA	PLAZA Integrative Orthology	organonitrogen compound catabolic process	ENSG00000143207
GO:0009896	IEA	PLAZA Integrative Orthology	positive regulation of catabolic process	ENSG00000143207
GO:1901564	IEA	PLAZA Integrative Orthology	organonitrogen compound metabolic process	ENSG00000143207
GO:0009894	IEA	PLAZA Integrative Orthology	regulation of catabolic process	ENSG00000143207
GO:0044257	IEA	PLAZA Integrative Orthology	cellular protein catabolic process	ENSG00000143207
GO:0045862	IEA	PLAZA Integrative Orthology	positive regulation of proteolysis	ENSG00000143207
GO:1901800	IEA	PLAZA Integrative Orthology	positive regulation of proteasomal protein catabolic process	ENSG00000143207
GO:0009658	IEA	PLAZA Integrative Orthology	chloroplast organization	AT5G23730
GO:0043687	IEA	PLAZA Integrative Orthology	post-translational protein modification	ENSG00000143207
GO:0009657	IEA	PLAZA Integrative Orthology	plastid organization	AT5G23730
GO:0043170	IEA	PLAZA Integrative Orthology	macromolecule metabolic process	ENSG00000143207
GO:0044260	IEA	PLAZA Integrative Orthology	cellular macromolecule metabolic process	ENSG00000143207
GO:0044265	IEA	PLAZA Integrative Orthology	cellular macromolecule catabolic process	ENSG00000143207
GO:2000058	IEA	PLAZA Integrative Orthology	regulation of ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:0019222	IEA	PLAZA Integrative Orthology	regulation of metabolic process	ENSG00000143207
GO:0032268	IEA	PLAZA Integrative Orthology	regulation of cellular protein metabolic process	ENSG00000143207
GO:0031331	IEA	PLAZA Integrative Orthology	positive regulation of cellular catabolic process	ENSG00000143207
GO:0019941	IEA	PLAZA Integrative Orthology	modification-dependent protein catabolic process	ENSG00000143207
GO:0060255	IEA	PLAZA Integrative Orthology	regulation of macromolecule metabolic process	ENSG00000143207
GO:0030163	IEA	PLAZA Integrative Orthology	protein catabolic process	ENSG00000143207
GO:0030162	IEA	PLAZA Integrative Orthology	regulation of proteolysis	ENSG00000143207
GO:0044267	IEA	PLAZA Integrative Orthology	cellular protein metabolic process	ENSG00000143207
GO:1901575	IEA	PLAZA Integrative Orthology	organic substance catabolic process	ENSG00000143207
GO:0006996	IEA	PLAZA Integrative Orthology	organelle organization	AT5G23730
GO:0043412	IEA	PLAZA Integrative Orthology	macromolecule modification	ENSG00000143207
GO:0009987	IEA	PLAZA Integrative Orthology	cellular process	AT5G23730
GO:0006511	IEA	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	ENSG00000143207
GO:0031329	IEA	PLAZA Integrative Orthology	regulation of cellular catabolic process	ENSG00000143207
GO:0010604	IEA	PLAZA Integrative Orthology	positive regulation of macromolecule metabolic process	ENSG00000143207
GO:0006508	IEA	PLAZA Integrative Orthology	proteolysis	ENSG00000143207
GO:0031325	IEA	PLAZA Integrative Orthology	positive regulation of cellular metabolic process	ENSG00000143207
GO:0071704	IEA	PLAZA Integrative Orthology	organic substance metabolic process	ENSG00000143207
GO:0080090	IEA	PLAZA Integrative Orthology	regulation of primary metabolic process	ENSG00000143207
GO:0050789	IEA	PLAZA Integrative Orthology	regulation of biological process	ENSG00000143207
GO:0031323	IEA	PLAZA Integrative Orthology	regulation of cellular metabolic process	ENSG00000143207

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IPI	Gene Ontology	protein binding	11 12
GO:0005515	IEA	InterPro	protein binding
GO:0000166	ISS	Gene Ontology	nucleotide binding	13
GO:0061659	IEA	PLAZA Integrative Orthology	ubiquitin-like protein ligase activity	ENSG00000143207
GO:0061630	IEA	PLAZA Integrative Orthology	ubiquitin protein ligase activity	ENSG00000143207
GO:0003824	IEA	PLAZA Integrative Orthology	catalytic activity	ENSG00000143207
GO:0019787	IEA	PLAZA Integrative Orthology	ubiquitin-like protein transferase activity	ENSG00000143207
GO:0140096	IEA	PLAZA Integrative Orthology	catalytic activity, acting on a protein	ENSG00000143207
GO:0004842	IEA	PLAZA Integrative Orthology	ubiquitin-protein transferase activity	ENSG00000143207
GO:0016740	IEA	PLAZA Integrative Orthology	transferase activity	ENSG00000143207

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0080008	ISS	Gene Ontology	Cul4-RING E3 ubiquitin ligase complex	14 15 16 17
GO:0005834	ISS	Gene Ontology	heterotrimeric G-protein complex	13
GO:0005634	ISM	Gene Ontology	nucleus	18
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	ENSG00000143207
GO:0043233	IEA	PLAZA Integrative Orthology	organelle lumen	ENSG00000143207
GO:0044444	IEA	PLAZA Integrative Orthology	cytoplasmic part	ENSG00000143207
GO:0044446	IEA	PLAZA Integrative Orthology	intracellular organelle part	ENSG00000143207
GO:0031981	IEA	PLAZA Integrative Orthology	nuclear lumen	ENSG00000143207
GO:0031464	IEA	PLAZA Integrative Orthology	Cul4A-RING E3 ubiquitin ligase complex	ENSG00000143207
GO:0005654	IEA	PLAZA Integrative Orthology	nucleoplasm	ENSG00000143207
GO:0031974	IEA	PLAZA Integrative Orthology	membrane-enclosed lumen	ENSG00000143207
GO:0044428	IEA	PLAZA Integrative Orthology	nuclear part	ENSG00000143207
GO:0044422	IEA	PLAZA Integrative Orthology	organelle part	ENSG00000143207
GO:0005737	IEA	PLAZA Integrative Orthology	cytoplasm	ENSG00000143207
GO:0070013	IEA	PLAZA Integrative Orthology	intracellular organelle lumen	ENSG00000143207

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR017986	WD40-repeat-containing domain

No MapMan annotations defined for this gene.

KeggID	Description
K10143	RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2

No chloroplast target sequence found.