Gene: AT5G52250 (Arabidopsis thaliana)

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Gene Identifier
AT5G52250
Transcript Identifier
AT5G52250.1
Gene Type
Coding gene
Location
5 : 21216898-21218055 : positive

Family Information

Homologous gene family
HOM02SEM002253
(30 genes in 9 species)
specific family

Descriptions

Description
Transducin/WD40 repeat-like superfamily protein
Curated Summary
Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. Functions as a repressor of UV-B signaling.
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Identifiers

Type Value
uniprotQ9LTJ6
aliasREPRESSOR OF UV-B PHOTOMORPHOGENESIS 1
aliasRUP1
aliasEFO1
aliasEARLY FLOWERING BY OVEREXPRESSION 1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043496
IDA
Gene Ontologyregulation of protein homodimerization activity1 2
GO:0010224
IGI, IEP
Gene Ontologyresponse to UV-B3 4 5 6 7 8
GO:0010218
IEP
Gene Ontologyresponse to far red light9 10
GO:0010114
IEP
Gene Ontologyresponse to red light9 10
GO:1903362
IEA
PLAZA Integrative Orthologyregulation of cellular protein catabolic process ENSG00000143207
GO:0036211
IEA
PLAZA Integrative Orthologyprotein modification process ENSG00000143207
GO:0061136
IEA
PLAZA Integrative Orthologyregulation of proteasomal protein catabolic process ENSG00000143207
GO:1903364
IEA
PLAZA Integrative Orthologypositive regulation of cellular protein catabolic process ENSG00000143207
GO:0042176
IEA
PLAZA Integrative Orthologyregulation of protein catabolic process ENSG00000143207
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process ENSG00000143207
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000143207
GO:0044238
IEA
PLAZA Integrative Orthologyprimary metabolic process ENSG00000143207
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process ENSG00000143207
GO:0044237
IEA
PLAZA Integrative Orthologycellular metabolic process ENSG00000143207
GO:0051246
IEA
PLAZA Integrative Orthologyregulation of protein metabolic process ENSG00000143207
GO:0051247
IEA
PLAZA Integrative Orthologypositive regulation of protein metabolic process ENSG00000143207
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process ENSG00000143207
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process ENSG00000143207
GO:0051603
IEA
PLAZA Integrative Orthologyproteolysis involved in cellular protein catabolic process ENSG00000143207
GO:0010498
IEA
PLAZA Integrative Orthologyproteasomal protein catabolic process ENSG00000143207
GO:0010212
IEA
PLAZA Integrative Orthologyresponse to ionizing radiation ENSG00000143207
GO:1903052
IEA
PLAZA Integrative Orthologypositive regulation of proteolysis involved in cellular protein catabolic process ENSG00000143207
GO:0008152
IEA
PLAZA Integrative Orthologymetabolic process ENSG00000143207
GO:0045732
IEA
PLAZA Integrative Orthologypositive regulation of protein catabolic process ENSG00000143207
GO:0043632
IEA
PLAZA Integrative Orthologymodification-dependent macromolecule catabolic process ENSG00000143207
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process ENSG00000143207
GO:0043161
IEA
PLAZA Integrative Orthologyproteasome-mediated ubiquitin-dependent protein catabolic process ENSG00000143207
GO:0006807
IEA
PLAZA Integrative Orthologynitrogen compound metabolic process ENSG00000143207
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization AT5G23730
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis AT5G23730
GO:0032436
IEA
PLAZA Integrative Orthologypositive regulation of proteasomal ubiquitin-dependent protein catabolic process ENSG00000143207
GO:1903050
IEA
PLAZA Integrative Orthologyregulation of proteolysis involved in cellular protein catabolic process ENSG00000143207
GO:0032434
IEA
PLAZA Integrative Orthologyregulation of proteasomal ubiquitin-dependent protein catabolic process ENSG00000143207
GO:0032270
IEA
PLAZA Integrative Orthologypositive regulation of cellular protein metabolic process ENSG00000143207
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process ENSG00000143207
GO:2000060
IEA
PLAZA Integrative Orthologypositive regulation of ubiquitin-dependent protein catabolic process ENSG00000143207
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process ENSG00000143207
GO:0009057
IEA
PLAZA Integrative Orthologymacromolecule catabolic process ENSG00000143207
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process ENSG00000143207
GO:0006464
IEA
PLAZA Integrative Orthologycellular protein modification process ENSG00000143207
GO:1901565
IEA
PLAZA Integrative Orthologyorganonitrogen compound catabolic process ENSG00000143207
GO:0009896
IEA
PLAZA Integrative Orthologypositive regulation of catabolic process ENSG00000143207
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process ENSG00000143207
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process ENSG00000143207
GO:0044257
IEA
PLAZA Integrative Orthologycellular protein catabolic process ENSG00000143207
GO:0045862
IEA
PLAZA Integrative Orthologypositive regulation of proteolysis ENSG00000143207
GO:1901800
IEA
PLAZA Integrative Orthologypositive regulation of proteasomal protein catabolic process ENSG00000143207
GO:0009658
IEA
PLAZA Integrative Orthologychloroplast organization AT5G23730
GO:0043687
IEA
PLAZA Integrative Orthologypost-translational protein modification ENSG00000143207
GO:0009657
IEA
PLAZA Integrative Orthologyplastid organization AT5G23730
GO:0043170
IEA
PLAZA Integrative Orthologymacromolecule metabolic process ENSG00000143207
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process ENSG00000143207
GO:0044265
IEA
PLAZA Integrative Orthologycellular macromolecule catabolic process ENSG00000143207
GO:2000058
IEA
PLAZA Integrative Orthologyregulation of ubiquitin-dependent protein catabolic process ENSG00000143207
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process ENSG00000143207
GO:0032268
IEA
PLAZA Integrative Orthologyregulation of cellular protein metabolic process ENSG00000143207
GO:0031331
IEA
PLAZA Integrative Orthologypositive regulation of cellular catabolic process ENSG00000143207
GO:0019941
IEA
PLAZA Integrative Orthologymodification-dependent protein catabolic process ENSG00000143207
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process ENSG00000143207
GO:0030163
IEA
PLAZA Integrative Orthologyprotein catabolic process ENSG00000143207
GO:0030162
IEA
PLAZA Integrative Orthologyregulation of proteolysis ENSG00000143207
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process ENSG00000143207
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process ENSG00000143207
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization AT5G23730
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification ENSG00000143207
GO:0009987
IEA
PLAZA Integrative Orthologycellular process AT5G23730
GO:0006511
IEA
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process ENSG00000143207
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process ENSG00000143207
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process ENSG00000143207
GO:0006508
IEA
PLAZA Integrative Orthologyproteolysis ENSG00000143207
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process ENSG00000143207
GO:0071704
IEA
PLAZA Integrative Orthologyorganic substance metabolic process ENSG00000143207
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000143207
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process ENSG00000143207
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000143207

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding11 12
GO:0005515
IEA
InterProprotein binding
GO:0000166
ISS
Gene Ontologynucleotide binding13
GO:0061659
IEA
PLAZA Integrative Orthologyubiquitin-like protein ligase activity ENSG00000143207
GO:0061630
IEA
PLAZA Integrative Orthologyubiquitin protein ligase activity ENSG00000143207
GO:0003824
IEA
PLAZA Integrative Orthologycatalytic activity ENSG00000143207
GO:0019787
IEA
PLAZA Integrative Orthologyubiquitin-like protein transferase activity ENSG00000143207
GO:0140096
IEA
PLAZA Integrative Orthologycatalytic activity, acting on a protein ENSG00000143207
GO:0004842
IEA
PLAZA Integrative Orthologyubiquitin-protein transferase activity ENSG00000143207
GO:0016740
IEA
PLAZA Integrative Orthologytransferase activity ENSG00000143207

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex14 15 16 17
GO:0005834
ISS
Gene Ontologyheterotrimeric G-protein complex13
GO:0005634
ISM
Gene Ontologynucleus18
GO:0005829
IEA
PLAZA Integrative Orthologycytosol ENSG00000143207
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen ENSG00000143207
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part ENSG00000143207
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part ENSG00000143207
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen ENSG00000143207
GO:0031464
IEA
PLAZA Integrative OrthologyCul4A-RING E3 ubiquitin ligase complex ENSG00000143207
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000143207
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen ENSG00000143207
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part ENSG00000143207
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part ENSG00000143207
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm ENSG00000143207
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen ENSG00000143207

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR001680WD40 repeat
IPR017986WD40-repeat-containing domain

No MapMan annotations defined for this gene.
KeggID Description
K10143RFWD2, COP1; E3 ubiquitin-protein ligase RFWD2
No chloroplast target sequence found.