Gene: AT5G27470 (Arabidopsis thaliana)

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Gene Identifier
AT5G27470
Transcript Identifier
AT5G27470.1
Gene Type
Coding gene
Location
5 : 9695087-9697154 : positive

Family Information

Homologous gene family
HOM02SEM000595
(68 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM000727
(60 genes in 26 species)
specific family

Descriptions

Description
seryl-tRNA synthetase / serine--tRNA ligase
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Identifiers

Type Value
uniprotQ39230

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006434
ISS
Gene Ontologyseryl-tRNA aminoacylation1
GO:0006434
IEA
InterProseryl-tRNA aminoacylation
GO:0006418
IEA
InterProtRNA aminoacylation for protein translation
GO:0046686
IEP
Gene Ontologyresponse to cadmium ion2 3
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process WBGene00005663
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II WBGene00005663
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process WBGene00005663
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process WBGene00005663
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process WBGene00005663
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process WBGene00005663
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated WBGene00005663
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process WBGene00005663
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process WBGene00005663
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation WBGene00005663
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process WBGene00005663
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process WBGene00005663
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process WBGene00005663
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process WBGene00005663
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression WBGene00005663
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process WBGene00005663
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process WBGene00005663
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression WBGene00005663
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process WBGene00005663
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription WBGene00005663
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process WBGene00005663
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process WBGene00005663
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process WBGene00005663
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process WBGene00005663
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process WBGene00005663
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription WBGene00005663
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription WBGene00005663
GO:0000122
IEA
PLAZA Integrative Orthologynegative regulation of transcription by RNA polymerase II WBGene00005663
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process WBGene00005663
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process WBGene00005663
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process WBGene00005663
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process WBGene00005663
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process WBGene00005663
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated WBGene00005663
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated WBGene00005663
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II WBGene00005663
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process WBGene00005663
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process WBGene00005663
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process WBGene00005663
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process WBGene00005663
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process WBGene00005663
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process WBGene00005663
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process WBGene00005663
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process WBGene00005663

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0004828
ISS
Gene Ontologyserine-tRNA ligase activity1
GO:0004828
IEA
InterProserine-tRNA ligase activity
GO:0005524
IEA
InterProATP binding
GO:0004812
IEA
InterProaminoacyl-tRNA ligase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm4
GO:0005737
IEA
InterProcytoplasm
GO:0005829
IDA
ISS
Gene Ontologycytosol5 6 7 8
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle YDR023W
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle YDR023W
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle YDR023W
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle YDR023W
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex YDR023W
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex YDR023W
GO:0035770
IEA
PLAZA Integrative Orthologyribonucleoprotein granule YDR023W
GO:0036464
IEA
PLAZA Integrative Orthologycytoplasmic ribonucleoprotein granule YDR023W
GO:0010494
IEA
PLAZA Integrative Orthologycytoplasmic stress granule YDR023W

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033729Serine-tRNA ligase catalytic core domain
IPR015866Serine-tRNA synthetase, type1, N-terminal
IPR002317Serine-tRNA ligase, type1
IPR002314Aminoacyl-tRNA synthetase, class II (G/ P/ S/T)
IPR006195Aminoacyl-tRNA synthetase, class II
IPR010978Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm

No MapMan annotations defined for this gene.
KeggID Description
K01875SARS, serS; seryl-tRNA synthetase [EC:6.1.1.11]
No chloroplast target sequence found.