Gene: AT5G26742 (Arabidopsis thaliana)

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Gene Identifier
AT5G26742
Transcript Identifier
AT5G26742.2
Gene Type
Coding gene
Location
5 : 9285540-9288871 : negative

Family Information

Homologous gene family
HOM02SEM000004
(1168 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM000017
(618 genes in 26 species)
specific family

Descriptions

Description
DEAD box RNA helicase (RH3)
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Identifiers

Type Value
uniprotQ8L7S8
aliasemb1138
aliasRH3
aliasAtRH3
aliasembryo defective 1138

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042254
IMP
Gene Ontologyribosome biogenesis1 2
GO:0009658
IMP
Gene Ontologychloroplast organization1 2
GO:0009651
IMP
Gene Ontologyresponse to salt stress1 2
GO:0000373
IMP
Gene OntologyGroup II intron splicing1 2
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003723
IEA
InterProRNA binding
GO:0004386
IEA
InterProhelicase activity
GO:0005524
ISS
Gene OntologyATP binding4
GO:0005524
IEA
InterProATP binding
GO:0008026
ISS
Gene OntologyATP-dependent helicase activity4
GO:0003729
IDA
Gene OntologymRNA binding5 6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus7
GO:0005634
IEA
InterPronucleus
GO:0009570
IDA
Gene Ontologychloroplast stroma8 9 10 11 12 13 14 15
GO:0009941
IDA
Gene Ontologychloroplast envelope12 13
GO:0009507
IDA
Gene Ontologychloroplast16 17
GO:0016020
IDA
Gene Ontologymembrane18 19

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR001878Zinc finger, CCHC-type
IPR001650Helicase, C-terminal
IPR012562GUCT
IPR011545DEAD/DEAH box helicase domain
IPR014001Helicase superfamily 1/2, ATP-binding domain
IPR014014RNA helicase, DEAD-box type, Q motif

No MapMan annotations defined for this gene.
KeggID Description
K16911DDX21; ATP-dependent RNA helicase DDX21 [EC:3.6.4.13]
No chloroplast target sequence found.