Gene: AT5G24330 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G24330
Transcript Identifier
AT5G24330.1
Gene Type
Coding gene
Location
5 : 8295245-8296997 : negative

Family Information

Homologous gene family
HOM02SEM008877
(10 genes in 4 species)
specific family

Descriptions

Curated Summary
Encodes a SET-domain protein, a H3K27 monomethyltransferases required for chromatin structure and gene silencing. Regulates heterochromatic DNA replication. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.
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Identifiers

Type Value
uniprotQ9FNE9
PlnTFDBPHD
aliasATXR6
aliasARABIDOPSIS TRITHORAX-RELATED PROTEIN 6
aliasSDG34
aliasSET DOMAIN PROTEIN 34

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006275
IGI
Gene Ontologyregulation of DNA replication1 2
GO:0070734
IDA
Gene Ontologyhistone H3-K27 methylation3 4
GO:0051726
IEP
Gene Ontologyregulation of cell cycle5 6
GO:0009901
IMP
Gene Ontologyanther dehiscence5 6
GO:0006355
ISS
Gene Ontologyregulation of transcription, DNA-templated7
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process FBgn0026577
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process FBgn0087008
GO:1903508
IEA
PLAZA Integrative Orthologypositive regulation of nucleic acid-templated transcription FBgn0087008
GO:0007444
IEA
PLAZA Integrative Orthologyimaginal disc development FBgn0087008
GO:0048229
IEA
PLAZA Integrative Orthologygametophyte development AT5G09790
GO:0035295
IEA
PLAZA Integrative Orthologytube development FBgn0087008
GO:0007165
IEA
PLAZA Integrative Orthologysignal transduction FBgn0087008
GO:0007560
IEA
PLAZA Integrative Orthologyimaginal disc morphogenesis FBgn0087008
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus FBgn0087008
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process FBgn0087008
GO:0097549
IEA
PLAZA Integrative Orthologychromatin organization involved in negative regulation of transcription FBgn0026577
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process FBgn0026577
GO:0035218
IEA
PLAZA Integrative Orthologyleg disc development FBgn0087008
GO:0034401
IEA
PLAZA Integrative Orthologychromatin organization involved in regulation of transcription FBgn0026577
GO:0031936
IEA
PLAZA Integrative Orthologynegative regulation of chromatin silencing FBgn0087008
GO:0031935
IEA
PLAZA Integrative Orthologyregulation of chromatin silencing FBgn0087008
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus FBgn0087008
GO:0048584
IEA
PLAZA Integrative Orthologypositive regulation of response to stimulus FBgn0087008
GO:0048736
IEA
PLAZA Integrative Orthologyappendage development FBgn0087008
GO:0048737
IEA
PLAZA Integrative Orthologyimaginal disc-derived appendage development FBgn0087008
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription FBgn0026577
GO:0007552
IEA
PLAZA Integrative Orthologymetamorphosis FBgn0087008
GO:1902533
IEA
PLAZA Integrative Orthologypositive regulation of intracellular signal transduction FBgn0087008
GO:0006342
IEA
PLAZA Integrative Orthologychromatin silencing FBgn0026577
GO:0033043
IEA
PLAZA Integrative Orthologyregulation of organelle organization FBgn0087008
GO:0033044
IEA
PLAZA Integrative Orthologyregulation of chromosome organization FBgn0087008
GO:1902531
IEA
PLAZA Integrative Orthologyregulation of intracellular signal transduction FBgn0087008
GO:0007154
IEA
PLAZA Integrative Orthologycell communication FBgn0087008
GO:0009292
IEA
PLAZA Integrative Orthologygenetic transfer AT5G09790
GO:0070828
IEA
PLAZA Integrative Orthologyheterochromatin organization FBgn0026577
GO:0009294
IEA
PLAZA Integrative OrthologyDNA mediated transformation AT5G09790
GO:0035107
IEA
PLAZA Integrative Orthologyappendage morphogenesis FBgn0087008
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression FBgn0087008
GO:0097696
IEA
PLAZA Integrative OrthologySTAT cascade FBgn0087008
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression FBgn0026577
GO:0046427
IEA
PLAZA Integrative Orthologypositive regulation of JAK-STAT cascade FBgn0087008
GO:0009887
IEA
PLAZA Integrative Orthologyanimal organ morphogenesis FBgn0087008
GO:0009888
IEA
PLAZA Integrative Orthologytissue development FBgn0087008
GO:0044764
IEA
PLAZA Integrative Orthologymulti-organism cellular process AT5G09790
GO:0046425
IEA
PLAZA Integrative Orthologyregulation of JAK-STAT cascade FBgn0087008
GO:0048569
IEA
PLAZA Integrative Orthologypost-embryonic animal organ development FBgn0087008
GO:0009886
IEA
PLAZA Integrative Orthologypost-embryonic animal morphogenesis FBgn0087008
GO:0048729
IEA
PLAZA Integrative Orthologytissue morphogenesis FBgn0087008
GO:0035114
IEA
PLAZA Integrative Orthologyimaginal disc-derived appendage morphogenesis FBgn0087008
GO:0035239
IEA
PLAZA Integrative Orthologytube morphogenesis FBgn0087008
GO:0048563
IEA
PLAZA Integrative Orthologypost-embryonic animal organ morphogenesis FBgn0087008
GO:0060969
IEA
PLAZA Integrative Orthologynegative regulation of gene silencing FBgn0087008
GO:0002165
IEA
PLAZA Integrative Orthologyinstar larval or pupal development FBgn0087008
GO:0060968
IEA
PLAZA Integrative Orthologyregulation of gene silencing FBgn0087008
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process FBgn0087008
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process FBgn0026577
GO:0035120
IEA
PLAZA Integrative Orthologypost-embryonic appendage morphogenesis FBgn0087008
GO:1904894
IEA
PLAZA Integrative Orthologypositive regulation of STAT cascade FBgn0087008
GO:2001251
IEA
PLAZA Integrative Orthologynegative regulation of chromosome organization FBgn0087008
GO:0060562
IEA
PLAZA Integrative Orthologyepithelial tube morphogenesis FBgn0087008
GO:1904892
IEA
PLAZA Integrative Orthologyregulation of STAT cascade FBgn0087008
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process FBgn0026577
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process FBgn0087008
GO:0010646
IEA
PLAZA Integrative Orthologyregulation of cell communication FBgn0087008
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus FBgn0087008
GO:0010647
IEA
PLAZA Integrative Orthologypositive regulation of cell communication FBgn0087008
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process FBgn0087008
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process FBgn0026577
GO:0040029
IEA
PLAZA Integrative Orthologyregulation of gene expression, epigenetic FBgn0026577
GO:0048707
IEA
PLAZA Integrative Orthologyinstar larval or pupal morphogenesis FBgn0087008
GO:0007480
IEA
PLAZA Integrative Orthologyimaginal disc-derived leg morphogenesis FBgn0087008
GO:0016458
IEA
PLAZA Integrative Orthologygene silencing FBgn0026577
GO:0070868
IEA
PLAZA Integrative Orthologyheterochromatin organization involved in chromatin silencing FBgn0026577
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process AT5G09790
GO:0010639
IEA
PLAZA Integrative Orthologynegative regulation of organelle organization FBgn0087008
GO:0007478
IEA
PLAZA Integrative Orthologyleg disc morphogenesis FBgn0087008
GO:0060429
IEA
PLAZA Integrative Orthologyepithelium development FBgn0087008
GO:0009653
IEA
PLAZA Integrative Orthologyanatomical structure morphogenesis FBgn0087008
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process FBgn0026577
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process FBgn0087008
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process FBgn0026577
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process FBgn0087008
GO:0023052
IEA
PLAZA Integrative Orthologysignaling FBgn0087008
GO:0051254
IEA
PLAZA Integrative Orthologypositive regulation of RNA metabolic process FBgn0087008
GO:0002009
IEA
PLAZA Integrative Orthologymorphogenesis of an epithelium FBgn0087008
GO:0023051
IEA
PLAZA Integrative Orthologyregulation of signaling FBgn0087008
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process FBgn0026577
GO:0023056
IEA
PLAZA Integrative Orthologypositive regulation of signaling FBgn0087008
GO:0009966
IEA
PLAZA Integrative Orthologyregulation of signal transduction FBgn0087008
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process FBgn0026577
GO:0009967
IEA
PLAZA Integrative Orthologypositive regulation of signal transduction FBgn0087008
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process FBgn0026577
GO:0045815
IEA
PLAZA Integrative Orthologypositive regulation of gene expression, epigenetic FBgn0087008
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process FBgn0087008
GO:0045814
IEA
PLAZA Integrative Orthologynegative regulation of gene expression, epigenetic FBgn0026577
GO:1902680
IEA
PLAZA Integrative Orthologypositive regulation of RNA biosynthetic process FBgn0087008
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization FBgn0087008
GO:0035556
IEA
PLAZA Integrative Orthologyintracellular signal transduction FBgn0087008
GO:0051129
IEA
PLAZA Integrative Orthologynegative regulation of cellular component organization FBgn0087008
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process FBgn0026577
GO:0045893
IEA
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated FBgn0087008
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process FBgn0087008
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated FBgn0026577
GO:0007259
IEA
PLAZA Integrative OrthologyJAK-STAT cascade FBgn0087008
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process FBgn0026577
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process FBgn0087008
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process FBgn0026577
GO:0048513
IEA
PLAZA Integrative Orthologyanimal organ development FBgn0087008
GO:0009555
IEA
PLAZA Integrative Orthologypollen development AT5G09790
GO:1902275
IEA
PLAZA Integrative Orthologyregulation of chromatin organization FBgn0087008
GO:1905268
IEA
PLAZA Integrative Orthologynegative regulation of chromatin organization FBgn0087008

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5 6
GO:0005515
IEA
InterProprotein binding
GO:0008270
IEA
InterProzinc ion binding
GO:0046976
IDA
Gene Ontologyhistone methyltransferase activity (H3-K27 specific)3 4
GO:0003677
ISS
Gene OntologyDNA binding7
GO:0003682
IEA
PLAZA Integrative Orthologychromatin binding FBgn0087008

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus5 6 8
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen FBgn0026577
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part FBgn0026577
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part FBgn0026577
GO:0031010
IEA
PLAZA Integrative OrthologyISWI-type complex FBgn0026577
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part FBgn0026577
GO:1904949
IEA
PLAZA Integrative OrthologyATPase complex FBgn0026577
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex FBgn0026577
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex FBgn0026577
GO:0000790
IEA
PLAZA Integrative Orthologynuclear chromatin FBgn0026577
GO:0000791
IEA
PLAZA Integrative Orthologyeuchromatin FBgn0087008
GO:0000792
IEA
PLAZA Integrative Orthologyheterochromatin FBgn0087008
GO:0000785
IEA
PLAZA Integrative Orthologychromatin FBgn0026577
GO:0005705
IEA
PLAZA Integrative Orthologypolytene chromosome interband FBgn0026577
GO:0009507
IEA
PLAZA Integrative Orthologychloroplast AT5G09790
GO:0005700
IEA
PLAZA Integrative Orthologypolytene chromosome FBgn0026577
GO:0005701
IEA
PLAZA Integrative Orthologypolytene chromosome chromocenter FBgn0087008
GO:0016586
IEA
PLAZA Integrative OrthologyRSC-type complex FBgn0087008
GO:0010369
IEA
PLAZA Integrative Orthologychromocenter FBgn0087008
GO:0098687
IEA
PLAZA Integrative Orthologychromosomal region FBgn0026577
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT5G09790
GO:0031213
IEA
PLAZA Integrative OrthologyRSF complex FBgn0026577
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen FBgn0026577
GO:0009536
IEA
PLAZA Integrative Orthologyplastid AT5G09790
GO:0005694
IEA
PLAZA Integrative Orthologychromosome FBgn0026577
GO:0044454
IEA
PLAZA Integrative Orthologynuclear chromosome part FBgn0026577
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen FBgn0026577
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part FBgn0026577
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT5G09790
GO:0000228
IEA
PLAZA Integrative Orthologynuclear chromosome FBgn0026577
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle FBgn0026577
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen FBgn0026577
GO:0070603
IEA
PLAZA Integrative OrthologySWI/SNF superfamily-type complex FBgn0026577
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle FBgn0026577

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR019787Zinc finger, PHD-finger
IPR001214SET domain
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.