Gene: AT5G02310 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G02310
Transcript Identifier
AT5G02310.1
Gene Type
Coding gene
Location
5 : 474279-482552 : positive

Family Information

Homologous gene family
HOM02SEM003752
(21 genes in 8 species)
specific family

Descriptions

Curated Summary
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.
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Identifiers

Type Value
aliasproteolysis 6
aliasPRT6

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050994
IMP
Gene Ontologyregulation of lipid catabolic process1 2
GO:0010029
IMP
Gene Ontologyregulation of seed germination1 2
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid1 2
GO:0010025
IMP
Gene Ontologywax biosynthetic process3 4
GO:0006723
IMP
Gene Ontologycuticle hydrocarbon biosynthetic process3 4
GO:0006511
IDA
Gene Ontologyubiquitin-dependent protein catabolic process5 6
GO:0050832
IMP
Gene Ontologydefense response to fungus7 8
GO:0071229
IEA
PLAZA Integrative Orthologycellular response to acid chemical ENSG00000159459
GO:0035967
IEA
PLAZA Integrative Orthologycellular response to topologically incorrect protein SPBC19C7.02
GO:0035966
IEA
PLAZA Integrative Orthologyresponse to topologically incorrect protein SPBC19C7.02
GO:0071501
IEA
PLAZA Integrative Orthologycellular response to sterol depletion SPBC19C7.02
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process SPBC19C7.02
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process SPBC19C7.02
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process SPAC15A10.11
GO:1903508
IEA
PLAZA Integrative Orthologypositive regulation of nucleic acid-templated transcription SPBC19C7.02
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II SPAC15A10.11
GO:1901698
IEA
PLAZA Integrative Orthologyresponse to nitrogen compound ENSG00000159459
GO:0006991
IEA
PLAZA Integrative Orthologyresponse to sterol depletion SPBC19C7.02
GO:0031929
IEA
PLAZA Integrative OrthologyTOR signaling ENSG00000159459
GO:1901699
IEA
PLAZA Integrative Orthologycellular response to nitrogen compound ENSG00000159459
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated SPAC15A10.11
GO:0007165
IEA
PLAZA Integrative Orthologysignal transduction SPBC19C7.02
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated SPAC15A10.11
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process SPAC15A10.11
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process SPBC19C7.02
GO:0034641
IEA
PLAZA Integrative Orthologycellular nitrogen compound metabolic process SPAC15A10.11
GO:0010558
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule biosynthetic process SPBC19C7.02
GO:0033036
IEA
PLAZA Integrative Orthologymacromolecule localization SPBC19C7.02
GO:0033554
IEA
PLAZA Integrative Orthologycellular response to stress SPBC19C7.02
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process SPAC15A10.11
GO:0048585
IEA
PLAZA Integrative Orthologynegative regulation of response to stimulus SPBC19C7.02
GO:0071630
IEA
PLAZA Integrative Orthologynuclear protein quality control by the ubiquitin-proteasome system SPBC19C7.02
GO:0071233
IEA
PLAZA Integrative Orthologycellular response to leucine ENSG00000159459
GO:0071596
IEA
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process via the N-end rule pathway SPAC15A10.11
GO:0009968
IEA
PLAZA Integrative Orthologynegative regulation of signal transduction SPBC19C7.02
GO:0071230
IEA
PLAZA Integrative Orthologycellular response to amino acid stimulus ENSG00000159459
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus SPBC19C7.02
GO:0006984
IEA
PLAZA Integrative OrthologyER-nucleus signaling pathway SPBC19C7.02
GO:1903507
IEA
PLAZA Integrative Orthologynegative regulation of nucleic acid-templated transcription SPBC19C7.02
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription SPAC15A10.11
GO:0043201
IEA
PLAZA Integrative Orthologyresponse to leucine ENSG00000159459
GO:1902532
IEA
PLAZA Integrative Orthologynegative regulation of intracellular signal transduction ENSG00000159459
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process SPAC15A10.11
GO:0043200
IEA
PLAZA Integrative Orthologyresponse to amino acid ENSG00000159459
GO:0006464
IEA
PLAZA Integrative Orthologycellular protein modification process SPAC15A10.11
GO:1902531
IEA
PLAZA Integrative Orthologyregulation of intracellular signal transduction ENSG00000159459
GO:0007154
IEA
PLAZA Integrative Orthologycell communication SPBC19C7.02
GO:1901044
IEA
PLAZA Integrative Orthologyprotein polyubiquitination involved in nucleus-associated proteasomal ubiquitin-dependent protein catabolic process SPBC19C7.02
GO:0016567
IEA
PLAZA Integrative Orthologyprotein ubiquitination SPBC19C7.02
GO:0010620
IEA
PLAZA Integrative Orthologynegative regulation of transcription by transcription factor catabolism SPBC19C7.02
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process SPAC15A10.11
GO:0031144
IEA
PLAZA Integrative Orthologyproteasome localization SPBC19C7.02
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process SPAC15A10.11
GO:0010467
IEA
PLAZA Integrative Orthologygene expression SPAC15A10.11
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression SPAC15A10.11
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression SPBC19C7.02
GO:0051179
IEA
PLAZA Integrative Orthologylocalization SPBC19C7.02
GO:0043161
IEA
PLAZA Integrative Orthologyproteasome-mediated ubiquitin-dependent protein catabolic process SPAC15A10.11
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression SPBC19C7.02
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process SPAC15A10.11
GO:0006139
IEA
PLAZA Integrative Orthologynucleobase-containing compound metabolic process SPAC15A10.11
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process SPAC15A10.11
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process SPAC15A10.11
GO:0090304
IEA
PLAZA Integrative Orthologynucleic acid metabolic process SPAC15A10.11
GO:0032006
IEA
PLAZA Integrative Orthologyregulation of TOR signaling ENSG00000159459
GO:0071218
IEA
PLAZA Integrative Orthologycellular response to misfolded protein SPBC19C7.02
GO:0070887
IEA
PLAZA Integrative Orthologycellular response to chemical stimulus SPBC19C7.02
GO:0032007
IEA
PLAZA Integrative Orthologynegative regulation of TOR signaling ENSG00000159459
GO:0070647
IEA
PLAZA Integrative Orthologyprotein modification by small protein conjugation or removal SPAC15A10.11
GO:0071455
IEA
PLAZA Integrative Orthologycellular response to hyperoxia SPBC19C7.02
GO:0071453
IEA
PLAZA Integrative Orthologycellular response to oxygen levels SPBC19C7.02
GO:0006515
IEA
PLAZA Integrative Orthologyprotein quality control for misfolded or incompletely synthesized proteins SPBC19C7.02
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus SPBC19C7.02
GO:0070482
IEA
PLAZA Integrative Orthologyresponse to oxygen levels SPBC19C7.02
GO:1901701
IEA
PLAZA Integrative Orthologycellular response to oxygen-containing compound ENSG00000159459
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process SPAC15A10.11
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process SPBC19C7.02
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II SPAC15A10.11
GO:0051172
IEA
PLAZA Integrative Orthologynegative regulation of nitrogen compound metabolic process SPBC19C7.02
GO:0036296
IEA
PLAZA Integrative Orthologyresponse to increased oxygen levels SPBC19C7.02
GO:0036295
IEA
PLAZA Integrative Orthologycellular response to increased oxygen levels SPBC19C7.02
GO:0036211
IEA
PLAZA Integrative Orthologyprotein modification process SPAC15A10.11
GO:0055093
IEA
PLAZA Integrative Orthologyresponse to hyperoxia SPBC19C7.02
GO:0031324
IEA
PLAZA Integrative Orthologynegative regulation of cellular metabolic process SPBC19C7.02
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process SPAC15A10.11
GO:0010243
IEA
PLAZA Integrative Orthologyresponse to organonitrogen compound ENSG00000159459
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process SPAC15A10.11
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process SPBC19C7.02
GO:0010646
IEA
PLAZA Integrative Orthologyregulation of cell communication SPBC19C7.02
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process SPAC15A10.11
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus SPBC19C7.02
GO:0010648
IEA
PLAZA Integrative Orthologynegative regulation of cell communication SPBC19C7.02
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process SPBC19C7.02
GO:0031327
IEA
PLAZA Integrative Orthologynegative regulation of cellular biosynthetic process SPBC19C7.02
GO:0032933
IEA
PLAZA Integrative OrthologySREBP signaling pathway SPBC19C7.02
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification SPAC15A10.11
GO:0000209
IEA
PLAZA Integrative Orthologyprotein polyubiquitination SPBC19C7.02
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process SPAC15A10.11
GO:0051788
IEA
PLAZA Integrative Orthologyresponse to misfolded protein SPBC19C7.02
GO:0071310
IEA
PLAZA Integrative Orthologycellular response to organic substance SPBC19C7.02
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process SPAC15A10.11
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process SPAC15A10.11
GO:0046483
IEA
PLAZA Integrative Orthologyheterocycle metabolic process SPAC15A10.11
GO:0045944
IEA
PLAZA Integrative Orthologypositive regulation of transcription by RNA polymerase II SPBC19C7.02
GO:0009890
IEA
PLAZA Integrative Orthologynegative regulation of biosynthetic process SPBC19C7.02
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process SPBC19C7.02
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process SPBC19C7.02
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process SPAC15A10.11
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process SPBC19C7.02
GO:1901360
IEA
PLAZA Integrative Orthologyorganic cyclic compound metabolic process SPAC15A10.11
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process SPAC15A10.11
GO:0034613
IEA
PLAZA Integrative Orthologycellular protein localization SPBC19C7.02
GO:0033365
IEA
PLAZA Integrative Orthologyprotein localization to organelle SPBC19C7.02
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription SPAC15A10.11
GO:0023052
IEA
PLAZA Integrative Orthologysignaling SPBC19C7.02
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process SPAC15A10.11
GO:1990139
IEA
PLAZA Integrative Orthologyprotein localization to nuclear periphery SPBC19C7.02
GO:0051254
IEA
PLAZA Integrative Orthologypositive regulation of RNA metabolic process SPBC19C7.02
GO:0051253
IEA
PLAZA Integrative Orthologynegative regulation of RNA metabolic process SPBC19C7.02
GO:0023051
IEA
PLAZA Integrative Orthologyregulation of signaling SPBC19C7.02
GO:0031503
IEA
PLAZA Integrative Orthologyprotein-containing complex localization SPBC19C7.02
GO:0023057
IEA
PLAZA Integrative Orthologynegative regulation of signaling SPBC19C7.02
GO:0006725
IEA
PLAZA Integrative Orthologycellular aromatic compound metabolic process SPAC15A10.11
GO:0045934
IEA
PLAZA Integrative Orthologynegative regulation of nucleobase-containing compound metabolic process SPBC19C7.02
GO:0009966
IEA
PLAZA Integrative Orthologyregulation of signal transduction SPBC19C7.02
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process SPBC19C7.02
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process SPBC19C7.02
GO:1902680
IEA
PLAZA Integrative Orthologypositive regulation of RNA biosynthetic process SPBC19C7.02
GO:0032446
IEA
PLAZA Integrative Orthologyprotein modification by small protein conjugation SPBC19C7.02
GO:0010498
IEA
PLAZA Integrative Orthologyproteasomal protein catabolic process SPAC15A10.11
GO:0035556
IEA
PLAZA Integrative Orthologyintracellular signal transduction ENSG00000159459
GO:0036369
IEA
PLAZA Integrative Orthologytranscription factor catabolic process SPBC19C7.02
GO:0034504
IEA
PLAZA Integrative Orthologyprotein localization to nucleus SPBC19C7.02
GO:0071417
IEA
PLAZA Integrative Orthologycellular response to organonitrogen compound ENSG00000159459
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process SPAC15A10.11
GO:2000113
IEA
PLAZA Integrative Orthologynegative regulation of cellular macromolecule biosynthetic process SPBC19C7.02
GO:2000638
IEA
PLAZA Integrative Orthologyregulation of SREBP signaling pathway SPBC19C7.02
GO:0071495
IEA
PLAZA Integrative Orthologycellular response to endogenous stimulus ENSG00000159459
GO:1990920
IEA
PLAZA Integrative Orthologyproteasome localization to nuclear periphery SPBC19C7.02
GO:0045893
IEA
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated SPBC19C7.02
GO:0045892
IEA
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated SPBC19C7.02
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process SPBC19C7.02
GO:0051641
IEA
PLAZA Integrative Orthologycellular localization SPBC19C7.02
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process SPAC15A10.11
GO:0034629
IEA
PLAZA Integrative Orthologycellular protein-containing complex localization SPBC19C7.02
GO:2000639
IEA
PLAZA Integrative Orthologynegative regulation of SREBP signaling pathway SPBC19C7.02
GO:1902679
IEA
PLAZA Integrative Orthologynegative regulation of RNA biosynthetic process SPBC19C7.02
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process SPBC19C7.02
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process SPBC19C7.02
GO:0080135
IEA
PLAZA Integrative Orthologyregulation of cellular response to stress SPBC19C7.02
GO:0008104
IEA
PLAZA Integrative Orthologyprotein localization SPBC19C7.02
GO:0080134
IEA
PLAZA Integrative Orthologyregulation of response to stress SPBC19C7.02
GO:0070727
IEA
PLAZA Integrative Orthologycellular macromolecule localization SPBC19C7.02

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
InterProzinc ion binding
GO:0004842
IDA
Gene Ontologyubiquitin-protein transferase activity5 6
GO:0019899
IEA
PLAZA Integrative Orthologyenzyme binding WBGene00016326
GO:0044390
IEA
PLAZA Integrative Orthologyubiquitin-like protein conjugating enzyme binding WBGene00016326
GO:0031406
IEA
PLAZA Integrative Orthologycarboxylic acid binding ENSG00000159459
GO:0043177
IEA
PLAZA Integrative Orthologyorganic acid binding ENSG00000159459
GO:0043168
IEA
PLAZA Integrative Orthologyanion binding ENSG00000159459
GO:0061659
IEA
PLAZA Integrative Orthologyubiquitin-like protein ligase activity SPAC15A10.11
GO:0016597
IEA
PLAZA Integrative Orthologyamino acid binding ENSG00000159459
GO:0061630
IEA
PLAZA Integrative Orthologyubiquitin protein ligase activity SPAC15A10.11
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000159459
GO:0031624
IEA
PLAZA Integrative Orthologyubiquitin conjugating enzyme binding WBGene00016326
GO:0036094
IEA
PLAZA Integrative Orthologysmall molecule binding ENSG00000159459
GO:0070728
IEA
PLAZA Integrative Orthologyleucine binding ENSG00000159459

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus9
GO:0005829
IEA
PLAZA Integrative Orthologycytosol ENSG00000024048
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm ENSG00000024048
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part ENSG00000024048

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR003126Zinc finger, UBR-type
IPR011991ArsR-like helix-turn-helix domain

No MapMan annotations defined for this gene.
KeggID Description
K11978UBR3; E3 ubiquitin-protein ligase UBR3
No chloroplast target sequence found.