Gene: AT3G48830 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G48830
Transcript Identifier
AT3G48830.1
Gene Type
Coding gene
Location
3 : 18103272-18110216 : positive

Family Information

Homologous gene family
HOM02SEM009379
(9 genes in 2 species)
specific family
Orthologous gene family
ORTHO02SEM011746
(5 genes in 2 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein
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Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISS
Gene OntologyRNA processing1
GO:0006396
IEA
InterProRNA processing
GO:0090615
IEA
PLAZA Integrative Orthologymitochondrial mRNA processing AT2G17580
GO:0090616
IEA
PLAZA Integrative Orthologymitochondrial mRNA 3'-end processing AT2G17580
GO:0031124
IEA
PLAZA Integrative OrthologymRNA 3'-end processing AT2G17580
GO:0031123
IEA
PLAZA Integrative OrthologyRNA 3'-end processing AT2G17580
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process AT2G17580
GO:0097222
IEA
PLAZA Integrative Orthologymitochondrial mRNA polyadenylation AT2G17580
GO:0006378
IEA
PLAZA Integrative OrthologymRNA polyadenylation AT2G17580
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing AT2G17580
GO:0000963
IEA
PLAZA Integrative Orthologymitochondrial RNA processing AT2G17580
GO:0043631
IEA
PLAZA Integrative OrthologyRNA polyadenylation AT2G17580
GO:0000965
IEA
PLAZA Integrative Orthologymitochondrial RNA 3'-end processing AT2G17580
GO:0000959
IEA
PLAZA Integrative Orthologymitochondrial RNA metabolic process AT2G17580
GO:0140053
IEA
PLAZA Integrative Orthologymitochondrial gene expression AT2G17580

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
ISS
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0016779
IEA
InterPronucleotidyltransferase activity
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004652
ISS
Gene Ontologypolynucleotide adenylyltransferase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
Gene Ontologyplasmodesma2 3
GO:0005739
ISM
Gene Ontologymitochondrion4
GO:0009536
IEA
PLAZA Integrative Orthologyplastid AT2G17580
GO:0009507
IEA
PLAZA Integrative Orthologychloroplast AT2G17580

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002646Poly A polymerase, head domain
IPR012677Nucleotide-binding alpha-beta plait domain superfamily
IPR032828tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain
IPR000504RNA recognition motif domain

No MapMan annotations defined for this gene.
KeggID Description
K12891SFRS2; splicing factor, arginine/serine-rich 2
K11294NCL, NSR1; nucleolin
K00974cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]
K03106SRP54, ffh; signal recognition particle subunit SRP54 [EC:3.6.5.4]
No chloroplast target sequence found.