Gene: AT3G27060 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G27060
Transcript Identifier
AT3G27060.1
Gene Type
Coding gene
Location
3 : 9979971-9981057 : negative

Family Information

Homologous gene family
HOM02SEM000721
(60 genes in 26 species)
specific family
Orthologous gene family
ORTHO02SEM000810
(56 genes in 26 species)
specific family

Descriptions

Description
Ferritin/ribonucleotide reductase-like family protein
Curated Summary
Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.
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Identifiers

Type Value
uniprotQ9LSD0
uniprotQ6Y657
aliasATTSO2
aliasTSO2
aliasTSO MEANING 'UGLY' IN CHINESE 2

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009263
IEA
InterProdeoxyribonucleotide biosynthetic process
GO:0055114
IEA
InterProoxidation-reduction process
GO:0051726
IMP
Gene Ontologyregulation of cell cycle1 2
GO:0012501
IMP
Gene Ontologyprogrammed cell death1 2
GO:0007275
IMP
Gene Ontologymulticellular organism development1 2
GO:0006281
TAS
Gene OntologyDNA repair1 2
GO:0006260
IMP
Gene OntologyDNA replication1 2
GO:0009186
ISS
Gene Ontologydeoxyribonucleoside diphosphate metabolic process3
GO:0009394
IEA
PLAZA Integrative Orthology2'-deoxyribonucleotide metabolic process SPBC25D12.04
GO:0009790
IEA
PLAZA Integrative Orthologyembryo development WBGene00004392
GO:0009792
IEA
PLAZA Integrative Orthologyembryo development ending in birth or egg hatching WBGene00004392
GO:0022402
IEA
PLAZA Integrative Orthologycell cycle process ENSG00000171848
GO:0043068
IEA
PLAZA Integrative Orthologypositive regulation of programmed cell death FBgn0011704
GO:0043067
IEA
PLAZA Integrative Orthologyregulation of programmed cell death FBgn0011704
GO:0022008
IEA
PLAZA Integrative Orthologyneurogenesis FBgn0011704
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process ENSG00000171848
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process FBgn0011704
GO:0051246
IEA
PLAZA Integrative Orthologyregulation of protein metabolic process FBgn0011704
GO:0051247
IEA
PLAZA Integrative Orthologypositive regulation of protein metabolic process FBgn0011704
GO:0046062
IEA
PLAZA Integrative OrthologydCDP metabolic process SPBC25D12.04
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process FBgn0011704
GO:0015949
IEA
PLAZA Integrative Orthologynucleobase-containing small molecule interconversion ENSG00000171848
GO:0050790
IEA
PLAZA Integrative Orthologyregulation of catalytic activity FBgn0011704
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process ENSG00000171848
GO:2000116
IEA
PLAZA Integrative Orthologyregulation of cysteine-type endopeptidase activity FBgn0011704
GO:0009200
IEA
PLAZA Integrative Orthologydeoxyribonucleoside triphosphate metabolic process SPBC25D12.04
GO:0009202
IEA
PLAZA Integrative Orthologydeoxyribonucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process ENSG00000171848
GO:0044843
IEA
PLAZA Integrative Orthologycell cycle G1/S phase transition ENSG00000171848
GO:0006213
IEA
PLAZA Integrative Orthologypyrimidine nucleoside metabolic process SPBC25D12.04
GO:0065009
IEA
PLAZA Integrative Orthologyregulation of molecular function FBgn0011704
GO:0010948
IEA
PLAZA Integrative Orthologynegative regulation of cell cycle process ENSG00000171848
GO:0045023
IEA
PLAZA Integrative OrthologyG0 to G1 transition ENSG00000171848
GO:0043085
IEA
PLAZA Integrative Orthologypositive regulation of catalytic activity FBgn0011704
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process ENSG00000171848
GO:0010941
IEA
PLAZA Integrative Orthologyregulation of cell death FBgn0011704
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription ENSG00000171848
GO:0010942
IEA
PLAZA Integrative Orthologypositive regulation of cell death FBgn0011704
GO:0070317
IEA
PLAZA Integrative Orthologynegative regulation of G0 to G1 transition ENSG00000171848
GO:2001056
IEA
PLAZA Integrative Orthologypositive regulation of cysteine-type endopeptidase activity FBgn0011704
GO:0070316
IEA
PLAZA Integrative Orthologyregulation of G0 to G1 transition ENSG00000171848
GO:0032270
IEA
PLAZA Integrative Orthologypositive regulation of cellular protein metabolic process FBgn0011704
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process ENSG00000171848
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process FBgn0011704
GO:0009133
IEA
PLAZA Integrative Orthologynucleoside diphosphate biosynthetic process SPBC25D12.04
GO:0009138
IEA
PLAZA Integrative Orthologypyrimidine nucleoside diphosphate metabolic process SPBC25D12.04
GO:0009259
IEA
PLAZA Integrative Orthologyribonucleotide metabolic process SPBC25D12.04
GO:0045786
IEA
PLAZA Integrative Orthologynegative regulation of cell cycle ENSG00000171848
GO:0042278
IEA
PLAZA Integrative Orthologypurine nucleoside metabolic process SPBC25D12.04
GO:0000278
IEA
PLAZA Integrative Orthologymitotic cell cycle ENSG00000171848
GO:0009139
IEA
PLAZA Integrative Orthologypyrimidine nucleoside diphosphate biosynthetic process SPBC25D12.04
GO:0016070
IEA
PLAZA Integrative OrthologyRNA metabolic process ENSG00000171848
GO:0072521
IEA
PLAZA Integrative Orthologypurine-containing compound metabolic process SPBC25D12.04
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process ENSG00000171848
GO:0032268
IEA
PLAZA Integrative Orthologyregulation of cellular protein metabolic process FBgn0011704
GO:0072528
IEA
PLAZA Integrative Orthologypyrimidine-containing compound biosynthetic process SPBC25D12.04
GO:0072527
IEA
PLAZA Integrative Orthologypyrimidine-containing compound metabolic process SPBC25D12.04
GO:0009141
IEA
PLAZA Integrative Orthologynucleoside triphosphate metabolic process SPBC25D12.04
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process ENSG00000171848
GO:0009145
IEA
PLAZA Integrative Orthologypurine nucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0009265
IEA
PLAZA Integrative Orthology2'-deoxyribonucleotide biosynthetic process SPBC25D12.04
GO:0009144
IEA
PLAZA Integrative Orthologypurine nucleoside triphosphate metabolic process SPBC25D12.04
GO:0009142
IEA
PLAZA Integrative Orthologynucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0009148
IEA
PLAZA Integrative Orthologypyrimidine nucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0009147
IEA
PLAZA Integrative Orthologypyrimidine nucleoside triphosphate metabolic process SPBC25D12.04
GO:1901657
IEA
PLAZA Integrative Orthologyglycosyl compound metabolic process SPBC25D12.04
GO:0046131
IEA
PLAZA Integrative Orthologypyrimidine ribonucleoside metabolic process SPBC25D12.04
GO:0019692
IEA
PLAZA Integrative Orthologydeoxyribose phosphate metabolic process SPBC25D12.04
GO:0019693
IEA
PLAZA Integrative Orthologyribose phosphate metabolic process SPBC25D12.04
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process ENSG00000171848
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process FBgn0011704
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process ENSG00000171848
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000171848
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000171848
GO:0009196
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleoside diphosphate metabolic process SPBC25D12.04
GO:0009193
IEA
PLAZA Integrative Orthologypyrimidine ribonucleoside diphosphate metabolic process SPBC25D12.04
GO:0006240
IEA
PLAZA Integrative OrthologydCDP biosynthetic process SPBC25D12.04
GO:1903047
IEA
PLAZA Integrative Orthologymitotic cell cycle process ENSG00000171848
GO:0009197
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleoside diphosphate biosynthetic process SPBC25D12.04
GO:0009116
IEA
PLAZA Integrative Orthologynucleoside metabolic process SPBC25D12.04
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process FBgn0011704
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000171848
GO:0009119
IEA
PLAZA Integrative Orthologyribonucleoside metabolic process SPBC25D12.04
GO:0046385
IEA
PLAZA Integrative Orthologydeoxyribose phosphate biosynthetic process SPBC25D12.04
GO:0006915
IEA
PLAZA Integrative Orthologyapoptotic process FBgn0011704
GO:0006919
IEA
PLAZA Integrative Orthologyactivation of cysteine-type endopeptidase activity involved in apoptotic process FBgn0011704
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process ENSG00000171848
GO:0042981
IEA
PLAZA Integrative Orthologyregulation of apoptotic process FBgn0011704
GO:0046704
IEA
PLAZA Integrative OrthologyCDP metabolic process SPBC25D12.04
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process ENSG00000171848
GO:0043280
IEA
PLAZA Integrative Orthologypositive regulation of cysteine-type endopeptidase activity involved in apoptotic process FBgn0011704
GO:0044093
IEA
PLAZA Integrative Orthologypositive regulation of molecular function FBgn0011704
GO:0043281
IEA
PLAZA Integrative Orthologyregulation of cysteine-type endopeptidase activity involved in apoptotic process FBgn0011704
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0011704
GO:0044770
IEA
PLAZA Integrative Orthologycell cycle phase transition ENSG00000171848
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression ENSG00000171848
GO:0010467
IEA
PLAZA Integrative Orthologygene expression ENSG00000171848
GO:0052548
IEA
PLAZA Integrative Orthologyregulation of endopeptidase activity FBgn0011704
GO:0051336
IEA
PLAZA Integrative Orthologyregulation of hydrolase activity FBgn0011704
GO:0052547
IEA
PLAZA Integrative Orthologyregulation of peptidase activity FBgn0011704
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process FBgn0011704
GO:0009211
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleoside triphosphate metabolic process SPBC25D12.04
GO:0009215
IEA
PLAZA Integrative Orthologypurine deoxyribonucleoside triphosphate metabolic process SPBC25D12.04
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0011704
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process SPBC25D12.04
GO:0044772
IEA
PLAZA Integrative Orthologymitotic cell cycle phase transition ENSG00000171848
GO:0006220
IEA
PLAZA Integrative Orthologypyrimidine nucleotide metabolic process SPBC25D12.04
GO:0006221
IEA
PLAZA Integrative Orthologypyrimidine nucleotide biosynthetic process SPBC25D12.04
GO:1901566
IEA
PLAZA Integrative Orthologyorganonitrogen compound biosynthetic process SPBC25D12.04
GO:0009212
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0045862
IEA
PLAZA Integrative Orthologypositive regulation of proteolysis FBgn0011704
GO:0009219
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleotide metabolic process SPBC25D12.04
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription ENSG00000171848
GO:0009218
IEA
PLAZA Integrative Orthologypyrimidine ribonucleotide metabolic process SPBC25D12.04
GO:0009216
IEA
PLAZA Integrative Orthologypurine deoxyribonucleoside triphosphate biosynthetic process SPBC25D12.04
GO:0051345
IEA
PLAZA Integrative Orthologypositive regulation of hydrolase activity FBgn0011704
GO:0000083
IEA
PLAZA Integrative Orthologyregulation of transcription involved in G1/S transition of mitotic cell cycle ENSG00000171848
GO:0000082
IEA
PLAZA Integrative OrthologyG1/S transition of mitotic cell cycle ENSG00000171848
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process ENSG00000171848
GO:0010952
IEA
PLAZA Integrative Orthologypositive regulation of peptidase activity FBgn0011704
GO:0010950
IEA
PLAZA Integrative Orthologypositive regulation of endopeptidase activity FBgn0011704
GO:0009185
IEA
PLAZA Integrative Orthologyribonucleoside diphosphate metabolic process SPBC25D12.04
GO:0009189
IEA
PLAZA Integrative Orthologydeoxyribonucleoside diphosphate biosynthetic process SPBC25D12.04
GO:0009221
IEA
PLAZA Integrative Orthologypyrimidine deoxyribonucleotide biosynthetic process SPBC25D12.04
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated ENSG00000171848
GO:0030162
IEA
PLAZA Integrative Orthologyregulation of proteolysis FBgn0011704
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process FBgn0011704
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated ENSG00000171848
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0011704
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process FBgn0011704
GO:0006508
IEA
PLAZA Integrative Orthologyproteolysis FBgn0011704
GO:0043065
IEA
PLAZA Integrative Orthologypositive regulation of apoptotic process FBgn0011704
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0011704
GO:0010564
IEA
PLAZA Integrative Orthologyregulation of cell cycle process ENSG00000171848

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
InterProoxidoreductase activity
GO:0004748
ISS
Gene Ontologyribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor3
GO:0005488
IEA
PLAZA Integrative Orthologybinding SPBC25D12.04
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding SPBC25D12.04
GO:0051063
IEA
PLAZA Integrative OrthologyCDP reductase activity SPBC25D12.04

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm4
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBC25D12.04
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBC25D12.04
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBC25D12.04
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBC25D12.04
GO:0044445
IEA
PLAZA Integrative Orthologycytosolic part SPBC25D12.04
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPBC25D12.04
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC25D12.04
GO:0005971
IEA
PLAZA Integrative Orthologyribonucleoside-diphosphate reductase complex SPBC25D12.04
GO:1990204
IEA
PLAZA Integrative Orthologyoxidoreductase complex SPBC25D12.04
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPBC25D12.04
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex SPBC25D12.04
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex SPBC25D12.04

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR033909Ribonucleotide reductase small subunit
IPR012348Ribonucleotide reductase-like
IPR000358Ribonucleotide reductase small subunit family
IPR030475Ribonucleotide reductase small subunit, acitve site
IPR009078Ferritin-like superfamily

No MapMan annotations defined for this gene.
KeggID Description
K10808RRM2; ribonucleoside-diphosphate reductase subunit M2 [EC:1.17.4.1]
No chloroplast target sequence found.