Gene: AT3G07970 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G07970
Transcript Identifier
AT3G07970.1
Gene Type
Coding gene
Location
3 : 2541006-2543370 : positive

Family Information

Homologous gene family
HOM02SEM000762
(58 genes in 4 species)
specific family
Duplication type
Tandem duplicate

Descriptions

Description
Pectin lyase-like superfamily protein
Curated Summary
Required for pollen separation during normal development. In qrt mutants, the outer walls of the four meiotic products of the pollen mother cell are fused, and pollen grains are released in tetrads.May be required for cell type-specific pectin degradation.
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Identifiers

Type Value
uniprotQ9SFB7
aliasQRT2
aliasQUARTET 2

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
ISS
Gene Ontologycarbohydrate metabolic process1
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0010047
IMP
Gene Ontologyfruit dehiscence2 3
GO:0009901
IMP
Gene Ontologyanther dehiscence2 3
GO:0009830
TAS
Gene Ontologycell wall modification involved in abscission2 3
GO:0045490
IMP
Gene Ontologypectin catabolic process4 5
GO:0048235
IMP
Gene Ontologypollen sperm cell differentiation6 7
GO:0022622
IEA
PLAZA Integrative Orthologyroot system development AT1G65570
GO:0009834
IEA
PLAZA Integrative Orthologyplant-type secondary cell wall biogenesis AT1G78400
GO:0009832
IEA
PLAZA Integrative Orthologyplant-type cell wall biogenesis AT1G78400
GO:0048364
IEA
PLAZA Integrative Orthologyroot development AT1G65570
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis AT1G78400
GO:0048829
IEA
PLAZA Integrative Orthologyroot cap development AT1G65570
GO:0042546
IEA
PLAZA Integrative Orthologycell wall biogenesis AT1G78400
GO:0010227
IEA
PLAZA Integrative Orthologyfloral organ abscission AT2G41850

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004650
IDA
ISS
Gene Ontologypolygalacturonase activity1 2 3
GO:0004650
IEA
InterPropolygalacturonase activity
GO:0005488
IEA
PLAZA Integrative Orthologybinding AT1G80170
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding AT1G80170

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region8
GO:0046658
IEA
PLAZA Integrative Orthologyanchored component of plasma membrane AT3G15720
GO:0044459
IEA
PLAZA Integrative Orthologyplasma membrane part AT3G15720
GO:0005623
IEA
PLAZA Integrative Orthologycell AT3G07830
GO:0009506
IEA
PLAZA Integrative Orthologyplasmodesma AT1G65570
GO:0048046
IEA
PLAZA Integrative Orthologyapoplast AT1G65570
GO:0055044
IEA
PLAZA Integrative Orthologysymplast AT1G65570
GO:0044464
IEA
PLAZA Integrative Orthologycell part AT3G07830
GO:0009505
IEA
PLAZA Integrative Orthologyplant-type cell wall AT3G07830
GO:0044425
IEA
PLAZA Integrative Orthologymembrane part AT3G15720
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane AT3G15720
GO:0005911
IEA
PLAZA Integrative Orthologycell-cell junction AT1G65570
GO:0005618
IEA
PLAZA Integrative Orthologycell wall AT3G07830
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT3G15720
GO:0030054
IEA
PLAZA Integrative Orthologycell junction AT1G65570
GO:0030312
IEA
PLAZA Integrative Orthologyexternal encapsulating structure AT3G07830
GO:0031226
IEA
PLAZA Integrative Orthologyintrinsic component of plasma membrane AT3G15720
GO:0031224
IEA
PLAZA Integrative Orthologyintrinsic component of membrane AT3G15720
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery AT3G07830
GO:0031225
IEA
PLAZA Integrative Orthologyanchored component of membrane AT3G15720

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor

No MapMan annotations defined for this gene.
KeggID Description
K01213E3.2.1.67; galacturan 1,4-alpha-galacturonidase
K01184E3.2.1.15; polygalacturonase
No chloroplast target sequence found.