Gene: AT3G07750 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G07750
Transcript Identifier
AT3G07750.1
Gene Type
Coding gene
Location
3 : 2473486-2475218 : positive

Family Information

Homologous gene family
HOM02SEM006502
(13 genes in 12 species)
specific family

Descriptions

Description
3'-5'-exoribonuclease family protein
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Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISS
Gene OntologyRNA processing1
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing YDL111C
GO:0043628
IEA
PLAZA Integrative OrthologyncRNA 3'-end processing YDL111C
GO:0042254
IEA
PLAZA Integrative Orthologyribosome biogenesis YDL111C
GO:0000459
IEA
PLAZA Integrative Orthologyexonucleolytic trimming involved in rRNA processing YDL111C
GO:0022008
IEA
PLAZA Integrative Orthologyneurogenesis FBgn0034065
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process YDL111C
GO:0000460
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA YDL111C
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process ENSG00000075914
GO:0000184
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay YDL111C
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation YDL111C
GO:0090503
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis, exonucleolytic YDL111C
GO:0065008
IEA
PLAZA Integrative Orthologyregulation of biological quality ENSG00000075914
GO:0090501
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis YDL111C
GO:0000469
IEA
PLAZA Integrative Orthologycleavage involved in rRNA processing YDL111C
GO:0043633
IEA
PLAZA Integrative Orthologypolyadenylation-dependent RNA catabolic process YDL111C
GO:0000467
IEA
PLAZA Integrative Orthologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YDL111C
GO:0043632
IEA
PLAZA Integrative Orthologymodification-dependent macromolecule catabolic process YDL111C
GO:0000466
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YDL111C
GO:0043634
IEA
PLAZA Integrative Orthologypolyadenylation-dependent ncRNA catabolic process YDL111C
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process ENSG00000075914
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process ENSG00000075914
GO:1901361
IEA
PLAZA Integrative Orthologyorganic cyclic compound catabolic process YDL111C
GO:0009892
IEA
PLAZA Integrative Orthologynegative regulation of metabolic process YDL111C
GO:0043928
IEA
PLAZA Integrative Orthologyexonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay YDL111C
GO:0000956
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process YDL111C
GO:0043488
IEA
PLAZA Integrative Orthologyregulation of mRNA stability ENSG00000075914
GO:0009894
IEA
PLAZA Integrative Orthologyregulation of catabolic process ENSG00000075914
GO:0043487
IEA
PLAZA Integrative Orthologyregulation of RNA stability ENSG00000075914
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process YDL111C
GO:0016072
IEA
PLAZA Integrative OrthologyrRNA metabolic process YDL111C
GO:0016074
IEA
PLAZA Integrative OrthologysnoRNA metabolic process YDL111C
GO:0016075
IEA
PLAZA Integrative OrthologyrRNA catabolic process YDL111C
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process YDL111C
GO:0016078
IEA
PLAZA Integrative OrthologytRNA catabolic process YDL111C
GO:0071038
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent tRNA catabolic process YDL111C
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process YDL111C
GO:1903311
IEA
PLAZA Integrative Orthologyregulation of mRNA metabolic process ENSG00000075914
GO:0006399
IEA
PLAZA Integrative OrthologytRNA metabolic process YDL111C
GO:0022613
IEA
PLAZA Integrative Orthologyribonucleoprotein complex biogenesis YDL111C
GO:0000288
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, deadenylation-dependent decay YDL111C
GO:0031329
IEA
PLAZA Integrative Orthologyregulation of cellular catabolic process ENSG00000075914
GO:0071025
IEA
PLAZA Integrative OrthologyRNA surveillance YDL111C
GO:0000291
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic YDL111C
GO:0071029
IEA
PLAZA Integrative Orthologynuclear ncRNA surveillance YDL111C
GO:0071027
IEA
PLAZA Integrative Orthologynuclear RNA surveillance YDL111C
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000075914
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000075914
GO:0019439
IEA
PLAZA Integrative Orthologyaromatic compound catabolic process YDL111C
GO:0061013
IEA
PLAZA Integrative Orthologyregulation of mRNA catabolic process ENSG00000075914
GO:0043144
IEA
PLAZA Integrative OrthologysnoRNA processing YDL111C
GO:0006364
IEA
PLAZA Integrative OrthologyrRNA processing YDL111C
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000075914
GO:0006402
IEA
PLAZA Integrative OrthologymRNA catabolic process YDL111C
GO:0006401
IEA
PLAZA Integrative OrthologyRNA catabolic process YDL111C
GO:0070481
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, non-stop decay YDL111C
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis YDL111C
GO:0071051
IEA
PLAZA Integrative Orthologypolyadenylation-dependent snoRNA 3'-end processing YDL111C
GO:0034427
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' YDL111C
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis YDL111C
GO:0034661
IEA
PLAZA Integrative OrthologyncRNA catabolic process YDL111C
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process YDL111C
GO:0046700
IEA
PLAZA Integrative Orthologyheterocycle catabolic process YDL111C
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process YDL111C
GO:0071042
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent mRNA catabolic process YDL111C
GO:0010629
IEA
PLAZA Integrative Orthologynegative regulation of gene expression YDL111C
GO:0071046
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent ncRNA catabolic process YDL111C
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0034065
GO:0071047
IEA
PLAZA Integrative Orthologypolyadenylation-dependent mRNA catabolic process YDL111C
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression YDL111C
GO:0034655
IEA
PLAZA Integrative Orthologynucleobase-containing compound catabolic process YDL111C
GO:0070478
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay YDL111C
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis YDL111C
GO:0009057
IEA
PLAZA Integrative Orthologymacromolecule catabolic process YDL111C
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process YDL111C
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development FBgn0034065
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0034065
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development FBgn0034065
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process YDL111C
GO:0044265
IEA
PLAZA Integrative Orthologycellular macromolecule catabolic process YDL111C
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process FBgn0034065
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process FBgn0034065
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process YDL111C
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0034065
GO:0044270
IEA
PLAZA Integrative Orthologycellular nitrogen compound catabolic process YDL111C
GO:0010608
IEA
PLAZA Integrative Orthologyposttranscriptional regulation of gene expression ENSG00000075914
GO:0070651
IEA
PLAZA Integrative Orthologynonfunctional rRNA decay YDL111C
GO:0010605
IEA
PLAZA Integrative Orthologynegative regulation of macromolecule metabolic process YDL111C
GO:0031123
IEA
PLAZA Integrative OrthologyRNA 3'-end processing YDL111C
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0034065
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process YDL111C
GO:0031125
IEA
PLAZA Integrative OrthologyrRNA 3'-end processing YDL111C
GO:0031126
IEA
PLAZA Integrative OrthologysnoRNA 3'-end processing YDL111C

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
ISS
Gene OntologyRNA binding1
GO:0000175
ISS
Gene Ontology3'-5'-exoribonuclease activity1
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000075914

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm2
GO:0043229
IEA
PLAZA Integrative Orthologyintracellular organelle SPBC16G5.10
GO:0043226
IEA
PLAZA Integrative Orthologyorganelle SPBC16G5.10
GO:0043227
IEA
PLAZA Integrative Orthologymembrane-bounded organelle SPBC16G5.10
GO:0000178
IEA
PLAZA Integrative Orthologyexosome (RNase complex) SPBC16G5.10
GO:0043231
IEA
PLAZA Integrative Orthologyintracellular membrane-bounded organelle SPBC16G5.10
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen YDL111C
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPBC16G5.10
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part YDL111C
GO:0005634
IEA
PLAZA Integrative Orthologynucleus SPBC16G5.10
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen YDL111C
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen YDL111C
GO:0000177
IEA
PLAZA Integrative Orthologycytoplasmic exosome (RNase complex) YDL111C
GO:0000176
IEA
PLAZA Integrative Orthologynuclear exosome (RNase complex) YDL111C
GO:0034399
IEA
PLAZA Integrative Orthologynuclear periphery FBgn0034065
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPBC16G5.10
GO:1905354
IEA
PLAZA Integrative Orthologyexoribonuclease complex SPBC16G5.10
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex SPBC16G5.10
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex SPBC16G5.10
GO:0005652
IEA
PLAZA Integrative Orthologynuclear lamina FBgn0034065
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000075914
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part YDL111C
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part YDL111C
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen YDL111C

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR027408PNPase/RNase PH domain superfamily
IPR001247Exoribonuclease, phosphorolytic domain 1
IPR015847Exoribonuclease, phosphorolytic domain 2
IPR020568Ribosomal protein S5 domain 2-type fold

No MapMan annotations defined for this gene.
KeggID Description
K12589RRP42, EXOSC7; exosome complex component RRP42
No chloroplast target sequence found.