Gene: AT2G39940 (Arabidopsis thaliana)

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Gene Identifier
AT2G39940
Transcript Identifier
AT2G39940.1
Gene Type
Coding gene
Location
2 : 16672848-16675486 : negative

Family Information

Homologous gene family
HOM02SEM002985
(25 genes in 3 species)
specific family
Orthologous gene family
ORTHO02SEM012937
(4 genes in 2 species)
specific family

Descriptions

Description
RNI-like superfamily protein
Curated Summary
Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation.
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Identifiers

Type Value
uniprotO04197
aliasCOI1
aliasCORONATINE INSENSITIVE 1

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009901
IMP
Gene Ontologyanther dehiscence1 2
GO:0010218
IMP
Gene Ontologyresponse to far red light3 4
GO:0009909
IMP
Gene Ontologyregulation of flower development3 4
GO:0009641
IMP
Gene Ontologyshade avoidance3 4
GO:0031146
IMP
Gene OntologySCF-dependent proteasomal ubiquitin-dependent protein catabolic process5 6
GO:0050832
IMP
Gene Ontologydefense response to fungus7 8
GO:0042742
IMP
Gene Ontologydefense response to bacterium9 10
GO:0010118
IMP
Gene Ontologystomatal movement9 10
GO:0031348
IMP
Gene Ontologynegative regulation of defense response11 12
GO:0009753
IMP
Gene Ontologyresponse to jasmonic acid13 14
GO:0009611
IMP
Gene Ontologyresponse to wounding13 14
GO:0009625
IMP
Gene Ontologyresponse to insect15 16
GO:0009867
IGI
TAS
Gene Ontologyjasmonic acid mediated signaling pathway17 18 19 20
GO:0009861
TAS
Gene Ontologyjasmonic acid and ethylene-dependent systemic resistance17 18 21 22
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process23 24
GO:0006952
TAS
Gene Ontologydefense response17 18
GO:0048443
IMP
Gene Ontologystamen development25 26
GO:0048364
IMP
Gene Ontologyroot development25 26

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5 6 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48
GO:0004842
ISS
Gene Ontologyubiquitin-protein transferase activity17 18

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019005
IPI
Gene OntologySCF ubiquitin ligase complex13 14
GO:0005737
ISM
Gene Ontologycytoplasm49

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR032675Leucine-rich repeat domain superfamily

No MapMan annotations defined for this gene.
KeggID Description
K13463COI-1; coronatine-insensitive protein 1
No chloroplast target sequence found.