Gene: AT2G21660 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT2G21660
Transcript Identifier
AT2G21660.1
Gene Type
Coding gene
Location
2 : 9265477-9266316 : negative

Family Information

Homologous gene family
HOM02SEM000060
(309 genes in 26 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

Descriptions

Description
cold, circadian rhythm, and rna binding 2
Curated Summary
Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway. There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).
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Identifiers

Type Value
uniprotQ03250
aliasATGRP7
aliasGR-RBP7
alias'cold, circadian rhythm, and rna binding 2'
aliasGRP7
aliasGLYCINE RICH PROTEIN 7
aliasCCR2
aliasGLYCINE-RICH RNA-BINDING PROTEIN 7

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009735
IDA
Gene Ontologyresponse to cytokinin1 2
GO:0000380
IMP
Gene Ontologyalternative mRNA splicing, via spliceosome3 4
GO:0010043
IEP
Gene Ontologyresponse to zinc ion5 6
GO:0045087
IDA, IMP
Gene Ontologyinnate immune response7 8 9 10
GO:0010228
IMP
Gene Ontologyvegetative to reproductive phase transition of meristem9 10
GO:0010119
IMP
Gene Ontologyregulation of stomatal movement11 12
GO:0006970
IMP
Gene Ontologyresponse to osmotic stress11 12
GO:0006406
IMP
Gene OntologymRNA export from nucleus11 12
GO:0009651
IEP
Gene Ontologyresponse to salt stress13 14 15 16
GO:0032508
IDA
Gene OntologyDNA duplex unwinding17 18
GO:0010501
IDA
Gene OntologyRNA secondary structure unwinding17 18
GO:0009409
IGI, IEP
Gene Ontologyresponse to cold13 14 17 18
GO:0046686
IEP
Gene Ontologyresponse to cadmium ion19 20
GO:0009414
IEP
Gene Ontologyresponse to water deprivation13 14
GO:0007623
IEP
TAS
Gene Ontologycircadian rhythm21 22
GO:0071345
IEA
PLAZA Integrative Orthologycellular response to cytokine stimulus ENSG00000147274
GO:0071347
IEA
PLAZA Integrative Orthologycellular response to interleukin-1 ENSG00000147274
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation ENSG00000147274
GO:0006508
IEA
PLAZA Integrative Orthologyproteolysis ENSG00000147274
GO:0006509
IEA
PLAZA Integrative Orthologymembrane protein ectodomain proteolysis ENSG00000147274
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process ENSG00000147274
GO:0044271
IEA
PLAZA Integrative Orthologycellular nitrogen compound biosynthetic process ENSG00000147274
GO:0009737
IEA
PLAZA Integrative Orthologyresponse to abscisic acid AT4G39260
GO:1903508
IEA
PLAZA Integrative Orthologypositive regulation of nucleic acid-templated transcription ENSG00000147274
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II ENSG00000147274
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process ENSG00000147274
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated ENSG00000147274
GO:1901576
IEA
PLAZA Integrative Orthologyorganic substance biosynthetic process ENSG00000147274
GO:0006351
IEA
PLAZA Integrative Orthologytranscription, DNA-templated ENSG00000147274
GO:0034645
IEA
PLAZA Integrative Orthologycellular macromolecule biosynthetic process ENSG00000147274
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process ENSG00000147274
GO:0097305
IEA
PLAZA Integrative Orthologyresponse to alcohol AT4G39260
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process ENSG00000147274
GO:0044260
IEA
PLAZA Integrative Orthologycellular macromolecule metabolic process ENSG00000147274
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription ENSG00000147274
GO:0009058
IEA
PLAZA Integrative Orthologybiosynthetic process ENSG00000147274
GO:0009059
IEA
PLAZA Integrative Orthologymacromolecule biosynthetic process ENSG00000147274
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process ENSG00000147274
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process ENSG00000147274
GO:0034097
IEA
PLAZA Integrative Orthologyresponse to cytokine ENSG00000147274
GO:0019438
IEA
PLAZA Integrative Orthologyaromatic compound biosynthetic process ENSG00000147274
GO:0034654
IEA
PLAZA Integrative Orthologynucleobase-containing compound biosynthetic process ENSG00000147274
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression ENSG00000147274
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression ENSG00000147274
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process ENSG00000147274
GO:0044249
IEA
PLAZA Integrative Orthologycellular biosynthetic process ENSG00000147274
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process ENSG00000147274
GO:0070887
IEA
PLAZA Integrative Orthologycellular response to chemical stimulus ENSG00000147274
GO:0033619
IEA
PLAZA Integrative Orthologymembrane protein proteolysis ENSG00000147274
GO:0001503
IEA
PLAZA Integrative Orthologyossification ENSG00000147274
GO:0000381
IEA
PLAZA Integrative Orthologyregulation of alternative mRNA splicing, via spliceosome ENSG00000147274
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis ENSG00000147274
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process ENSG00000147274
GO:0009631
IEA
PLAZA Integrative Orthologycold acclimation AT3G26420
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process ENSG00000147274
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II ENSG00000147274
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly ENSG00000147274
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process ENSG00000147274
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process ENSG00000147274
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process ENSG00000147274
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process ENSG00000147274
GO:0032774
IEA
PLAZA Integrative OrthologyRNA biosynthetic process ENSG00000147274
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus ENSG00000147274
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process ENSG00000147274
GO:1903311
IEA
PLAZA Integrative Orthologyregulation of mRNA metabolic process ENSG00000147274
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process ENSG00000147274
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization ENSG00000147274
GO:0033993
IEA
PLAZA Integrative Orthologyresponse to lipid AT4G39260
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process ENSG00000147274
GO:0001649
IEA
PLAZA Integrative Orthologyosteoblast differentiation ENSG00000147274
GO:0048024
IEA
PLAZA Integrative Orthologyregulation of mRNA splicing, via spliceosome ENSG00000147274
GO:0071310
IEA
PLAZA Integrative Orthologycellular response to organic substance ENSG00000147274
GO:0018130
IEA
PLAZA Integrative Orthologyheterocycle biosynthetic process ENSG00000147274
GO:0045944
IEA
PLAZA Integrative Orthologypositive regulation of transcription by RNA polymerase II ENSG00000147274
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process ENSG00000147274
GO:1901362
IEA
PLAZA Integrative Orthologyorganic cyclic compound biosynthetic process ENSG00000147274
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process ENSG00000147274
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process ENSG00000147274
GO:0051259
IEA
PLAZA Integrative Orthologyprotein complex oligomerization ENSG00000147274
GO:0097659
IEA
PLAZA Integrative Orthologynucleic acid-templated transcription ENSG00000147274
GO:0070555
IEA
PLAZA Integrative Orthologyresponse to interleukin-1 ENSG00000147274
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process ENSG00000147274
GO:0043484
IEA
PLAZA Integrative Orthologyregulation of RNA splicing ENSG00000147274
GO:0051254
IEA
PLAZA Integrative Orthologypositive regulation of RNA metabolic process ENSG00000147274
GO:0050684
IEA
PLAZA Integrative Orthologyregulation of mRNA processing ENSG00000147274
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly ENSG00000147274
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process ENSG00000147274
GO:1902680
IEA
PLAZA Integrative Orthologypositive regulation of RNA biosynthetic process ENSG00000147274
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process ENSG00000147274
GO:0045893
IEA
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated ENSG00000147274
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process ENSG00000147274
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process ENSG00000147274

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
InterPronucleotide binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IPI
Gene Ontologyprotein binding23 24
GO:0003729
IDA
Gene OntologymRNA binding3 4 25 26
GO:0003723
IDA
ISS
Gene OntologyRNA binding13 14 17 18 27 28 29
GO:0003697
IDA
Gene Ontologysingle-stranded DNA binding13 14
GO:0003690
IDA
Gene Ontologydouble-stranded DNA binding13 14
GO:0001067
IEA
PLAZA Integrative Orthologyregulatory region nucleic acid binding ENSG00000147274
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding ENSG00000147274
GO:0001047
IEA
PLAZA Integrative Orthologycore promoter binding ENSG00000147274
GO:0043565
IEA
PLAZA Integrative Orthologysequence-specific DNA binding ENSG00000147274
GO:1990837
IEA
PLAZA Integrative Orthologysequence-specific double-stranded DNA binding ENSG00000147274
GO:0003682
IEA
PLAZA Integrative Orthologychromatin binding ENSG00000147274
GO:0001012
IEA
PLAZA Integrative OrthologyRNA polymerase II regulatory region DNA binding ENSG00000147274
GO:0044212
IEA
PLAZA Integrative Orthologytranscription regulatory region DNA binding ENSG00000147274
GO:0000987
IEA
PLAZA Integrative Orthologyproximal promoter sequence-specific DNA binding ENSG00000147274
GO:0019904
IEA
PLAZA Integrative Orthologyprotein domain specific binding ENSG00000147274
GO:0000976
IEA
PLAZA Integrative Orthologytranscription regulatory region sequence-specific DNA binding ENSG00000147274
GO:0000977
IEA
PLAZA Integrative OrthologyRNA polymerase II regulatory region sequence-specific DNA binding ENSG00000147274
GO:0000978
IEA
PLAZA Integrative OrthologyRNA polymerase II proximal promoter sequence-specific DNA binding ENSG00000147274

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048046
IDA
Gene Ontologyapoplast30 31
GO:0009506
IDA
Gene Ontologyplasmodesma32 33
GO:0005829
IDA
Gene Ontologycytosol34 35
GO:0009507
IDA
Gene Ontologychloroplast36 37
GO:0005737
IDA
Gene Ontologycytoplasm11 12 38 39
GO:0005634
IDA
ISS
Gene Ontologynucleus11 12 21 22 38 39
GO:0005777
IDA
Gene Ontologyperoxisome40 41
GO:0030312
IEA
PLAZA Integrative Orthologyexternal encapsulating structure AT4G39260
GO:0012505
IEA
PLAZA Integrative Orthologyendomembrane system AT4G39260
GO:0016020
IEA
PLAZA Integrative Orthologymembrane AT4G39260
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen AT4G39260
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part ENSG00000147274
GO:0044422
IEA
PLAZA Integrative Orthologyorganelle part AT4G39260
GO:0044421
IEA
PLAZA Integrative Orthologyextracellular region part ENSG00000147274
GO:0044428
IEA
PLAZA Integrative Orthologynuclear part AT4G39260
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000147274
GO:0044530
IEA
PLAZA Integrative Orthologysupraspliceosomal complex ENSG00000147274
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex ENSG00000147274
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex ENSG00000147274
GO:0005719
IEA
PLAZA Integrative Orthologynuclear euchromatin ENSG00000147274
GO:0000790
IEA
PLAZA Integrative Orthologynuclear chromatin ENSG00000147274
GO:0000791
IEA
PLAZA Integrative Orthologyeuchromatin ENSG00000147274
GO:0000785
IEA
PLAZA Integrative Orthologychromatin ENSG00000147274
GO:0005681
IEA
PLAZA Integrative Orthologyspliceosomal complex ENSG00000147274
GO:0005794
IEA
PLAZA Integrative OrthologyGolgi apparatus AT4G39260
GO:1903561
IEA
PLAZA Integrative Orthologyextracellular vesicle ENSG00000147274
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery AT4G39260
GO:0005618
IEA
PLAZA Integrative Orthologycell wall AT4G39260
GO:0005615
IEA
PLAZA Integrative Orthologyextracellular space ENSG00000147274
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen AT4G39260
GO:0070062
IEA
PLAZA Integrative Orthologyextracellular exosome ENSG00000147274
GO:0005730
IEA
PLAZA Integrative Orthologynucleolus AT4G39260
GO:0005694
IEA
PLAZA Integrative Orthologychromosome ENSG00000147274
GO:0044454
IEA
PLAZA Integrative Orthologynuclear chromosome part ENSG00000147274
GO:0031982
IEA
PLAZA Integrative Orthologyvesicle ENSG00000147274
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen AT4G39260
GO:0005886
IEA
PLAZA Integrative Orthologyplasma membrane AT4G39260
GO:0044446
IEA
PLAZA Integrative Orthologyintracellular organelle part AT4G39260
GO:0000228
IEA
PLAZA Integrative Orthologynuclear chromosome ENSG00000147274
GO:0043232
IEA
PLAZA Integrative Orthologyintracellular non-membrane-bounded organelle AT4G39260
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen AT4G39260
GO:0043230
IEA
PLAZA Integrative Orthologyextracellular organelle ENSG00000147274
GO:0071013
IEA
PLAZA Integrative Orthologycatalytic step 2 spliceosome ENSG00000147274
GO:0043228
IEA
PLAZA Integrative Orthologynon-membrane-bounded organelle AT4G39260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012677Nucleotide-binding alpha-beta plait domain superfamily
IPR000504RNA recognition motif domain

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.