Gene: AT1G54440 (Arabidopsis thaliana)

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Gene Identifier
AT1G54440
Transcript Identifier
AT1G54440.2
Gene Type
Coding gene
Location
1 : 20323284-20327931 : positive

Family Information

Homologous gene family
HOM02SEM001155
(45 genes in 26 species)
specific family

Descriptions

Description
Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
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Identifiers

Type Value

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006139
IEA
InterPronucleobase-containing compound metabolic process
GO:0044237
IEA
InterProcellular metabolic process
GO:1902466
IMP
Gene Ontologypositive regulation of histone H3-K27 trimethylation1 2
GO:1990280
IMP
Gene OntologyRNA localization to chromatin3 4
GO:1904281
IMP
Gene Ontologypositive regulation of transcription by RNA polymerase V3 4
GO:1903705
IMP
Gene Ontologypositive regulation of production of siRNA involved in RNA interference3 4
GO:0080188
IMP
Gene OntologyRNA-directed DNA methylation3 4 5 6
GO:0044030
IMP
Gene Ontologyregulation of DNA methylation3 4
GO:0006346
IMP
Gene Ontologymethylation-dependent chromatin silencing3 4
GO:0009790
IEA
PLAZA Integrative Orthologyembryo development WBGene00000796
GO:0034470
IEA
PLAZA Integrative OrthologyncRNA processing AT5G35910
GO:0043628
IEA
PLAZA Integrative OrthologyncRNA 3'-end processing YOR001W
GO:0070727
IEA
PLAZA Integrative Orthologycellular macromolecule localization YOR001W
GO:0034475
IEA
PLAZA Integrative OrthologyU4 snRNA 3'-end processing YOR001W
GO:0034473
IEA
PLAZA Integrative OrthologyU1 snRNA 3'-end processing YOR001W
GO:0009792
IEA
PLAZA Integrative Orthologyembryo development ending in birth or egg hatching WBGene00000796
GO:0000737
IEA
PLAZA Integrative OrthologyDNA catabolic process, endonucleolytic WBGene00000796
GO:0034472
IEA
PLAZA Integrative OrthologysnRNA 3'-end processing YOR001W
GO:0042254
IEA
PLAZA Integrative Orthologyribosome biogenesis AT5G35910
GO:0000459
IEA
PLAZA Integrative Orthologyexonucleolytic trimming involved in rRNA processing YOR001W
GO:0000973
IEA
PLAZA Integrative Orthologyposttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery YOR001W
GO:0000972
IEA
PLAZA Integrative Orthologytranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery YOR001W
GO:0060249
IEA
PLAZA Integrative Orthologyanatomical structure homeostasis ENSG00000171824
GO:0051641
IEA
PLAZA Integrative Orthologycellular localization YOR001W
GO:0000460
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA YOR001W
GO:0008219
IEA
PLAZA Integrative Orthologycell death WBGene00000796
GO:0071897
IEA
PLAZA Integrative OrthologyDNA biosynthetic process ENSG00000171824
GO:0032200
IEA
PLAZA Integrative Orthologytelomere organization ENSG00000171824
GO:0032205
IEA
PLAZA Integrative Orthologynegative regulation of telomere maintenance ENSG00000171824
GO:0051129
IEA
PLAZA Integrative Orthologynegative regulation of cellular component organization ENSG00000171824
GO:0032204
IEA
PLAZA Integrative Orthologyregulation of telomere maintenance ENSG00000171824
GO:0090503
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis, exonucleolytic YOR001W
GO:0065008
IEA
PLAZA Integrative Orthologyregulation of biological quality ENSG00000171824
GO:0090501
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis YOR001W
GO:0030262
IEA
PLAZA Integrative Orthologyapoptotic nuclear changes WBGene00000796
GO:0000469
IEA
PLAZA Integrative Orthologycleavage involved in rRNA processing YOR001W
GO:0043631
IEA
PLAZA Integrative OrthologyRNA polyadenylation FBgn0038269
GO:0002252
IEA
PLAZA Integrative Orthologyimmune effector process FBgn0038269
GO:0043633
IEA
PLAZA Integrative Orthologypolyadenylation-dependent RNA catabolic process SPAC1F3.01
GO:0000467
IEA
PLAZA Integrative Orthologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YOR001W
GO:0043632
IEA
PLAZA Integrative Orthologymodification-dependent macromolecule catabolic process SPAC1F3.01
GO:0000466
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YOR001W
GO:0040007
IEA
PLAZA Integrative Orthologygrowth WBGene00000796
GO:0002376
IEA
PLAZA Integrative Orthologyimmune system process FBgn0038269
GO:0043634
IEA
PLAZA Integrative Orthologypolyadenylation-dependent ncRNA catabolic process SPAC1F3.01
GO:1901361
IEA
PLAZA Integrative Orthologyorganic cyclic compound catabolic process SPAC1F3.01
GO:1904357
IEA
PLAZA Integrative Orthologynegative regulation of telomere maintenance via telomere lengthening ENSG00000171824
GO:1904356
IEA
PLAZA Integrative Orthologyregulation of telomere maintenance via telomere lengthening ENSG00000171824
GO:1904872
IEA
PLAZA Integrative Orthologyregulation of telomerase RNA localization to Cajal body ENSG00000171824
GO:0090672
IEA
PLAZA Integrative Orthologytelomerase RNA localization ENSG00000171824
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism FBgn0038269
GO:0000956
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process SPAC1F3.01
GO:0090670
IEA
PLAZA Integrative OrthologyRNA localization to Cajal body ENSG00000171824
GO:0090671
IEA
PLAZA Integrative Orthologytelomerase RNA localization to Cajal body ENSG00000171824
GO:0097194
IEA
PLAZA Integrative Orthologyexecution phase of apoptosis WBGene00000796
GO:0000278
IEA
PLAZA Integrative Orthologymitotic cell cycle FBgn0038269
GO:0071031
IEA
PLAZA Integrative Orthologynuclear mRNA surveillance of mRNA 3'-end processing YOR001W
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process SPAC1F3.01
GO:0071030
IEA
PLAZA Integrative Orthologynuclear mRNA surveillance of spliceosomal pre-mRNA splicing ENSG00000171824
GO:0016192
IEA
PLAZA Integrative Orthologyvesicle-mediated transport WBGene00000796
GO:0016072
IEA
PLAZA Integrative OrthologyrRNA metabolic process AT5G35910
GO:0071035
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent rRNA catabolic process YOR001W
GO:0016073
IEA
PLAZA Integrative OrthologysnRNA metabolic process YOR001W
GO:0071036
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent snoRNA catabolic process YOR001W
GO:0016074
IEA
PLAZA Integrative OrthologysnoRNA metabolic process YOR001W
GO:0071033
IEA
PLAZA Integrative Orthologynuclear retention of pre-mRNA at the site of transcription YOR001W
GO:0010639
IEA
PLAZA Integrative Orthologynegative regulation of organelle organization ENSG00000171824
GO:0016075
IEA
PLAZA Integrative OrthologyrRNA catabolic process YOR001W
GO:0071034
IEA
PLAZA Integrative OrthologyCUT catabolic process YOR001W
GO:0071039
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent CUT catabolic process YOR001W
GO:0016076
IEA
PLAZA Integrative OrthologysnRNA catabolic process YOR001W
GO:0016077
IEA
PLAZA Integrative OrthologysnoRNA catabolic process YOR001W
GO:0071037
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent snRNA catabolic process YOR001W
GO:0016078
IEA
PLAZA Integrative OrthologytRNA catabolic process YOR001W
GO:0071038
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent tRNA catabolic process YOR001W
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process FBgn0038269
GO:0008298
IEA
PLAZA Integrative Orthologyintracellular mRNA localization YOR001W
GO:0090685
IEA
PLAZA Integrative OrthologyRNA localization to nucleus ENSG00000171824
GO:0006399
IEA
PLAZA Integrative OrthologytRNA metabolic process YOR001W
GO:0008334
IEA
PLAZA Integrative Orthologyhistone mRNA metabolic process YOR001W
GO:0000723
IEA
PLAZA Integrative Orthologytelomere maintenance ENSG00000171824
GO:0006278
IEA
PLAZA Integrative OrthologyRNA-dependent DNA biosynthetic process ENSG00000171824
GO:0007004
IEA
PLAZA Integrative Orthologytelomere maintenance via telomerase ENSG00000171824
GO:0022613
IEA
PLAZA Integrative Orthologyribonucleoprotein complex biogenesis AT5G35910
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing FBgn0038269
GO:0006952
IEA
PLAZA Integrative Orthologydefense response FBgn0038269
GO:0110064
IEA
PLAZA Integrative OrthologylncRNA catabolic process SPAC1F3.01
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress FBgn0038269
GO:0006308
IEA
PLAZA Integrative OrthologyDNA catabolic process WBGene00000796
GO:0016180
IEA
PLAZA Integrative OrthologysnRNA processing YOR001W
GO:0071025
IEA
PLAZA Integrative OrthologyRNA surveillance SPAC1F3.01
GO:0006309
IEA
PLAZA Integrative Orthologyapoptotic DNA fragmentation WBGene00000796
GO:0033621
IEA
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, meiosis-specific transcripts SPAC1F3.01
GO:0071028
IEA
PLAZA Integrative Orthologynuclear mRNA surveillance SPAC1F3.01
GO:0071029
IEA
PLAZA Integrative Orthologynuclear ncRNA surveillance SPAC1F3.01
GO:0071027
IEA
PLAZA Integrative Orthologynuclear RNA surveillance SPAC1F3.01
GO:0019439
IEA
PLAZA Integrative Orthologyaromatic compound catabolic process SPAC1F3.01
GO:2001251
IEA
PLAZA Integrative Orthologynegative regulation of chromosome organization ENSG00000171824
GO:0043144
IEA
PLAZA Integrative OrthologysnoRNA processing YOR001W
GO:0007059
IEA
PLAZA Integrative Orthologychromosome segregation FBgn0038269
GO:0006364
IEA
PLAZA Integrative OrthologyrRNA processing AT5G35910
GO:0006402
IEA
PLAZA Integrative OrthologymRNA catabolic process SPAC1F3.01
GO:0006401
IEA
PLAZA Integrative OrthologyRNA catabolic process SPAC1F3.01
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis AT5G35910
GO:0071051
IEA
PLAZA Integrative Orthologypolyadenylation-dependent snoRNA 3'-end processing YOR001W
GO:0098657
IEA
PLAZA Integrative Orthologyimport into cell WBGene00000796
GO:0006915
IEA
PLAZA Integrative Orthologyapoptotic process WBGene00000796
GO:2000278
IEA
PLAZA Integrative Orthologyregulation of DNA biosynthetic process ENSG00000171824
GO:0051607
IEA
PLAZA Integrative Orthologydefense response to virus FBgn0038269
GO:2000279
IEA
PLAZA Integrative Orthologynegative regulation of DNA biosynthetic process ENSG00000171824
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis YOR001W
GO:0042868
IEA
PLAZA Integrative Orthologyantisense RNA metabolic process YOR001W
GO:0034661
IEA
PLAZA Integrative OrthologyncRNA catabolic process SPAC1F3.01
GO:0034660
IEA
PLAZA Integrative OrthologyncRNA metabolic process SPAC1F3.01
GO:0043277
IEA
PLAZA Integrative Orthologyapoptotic cell clearance WBGene00000796
GO:0046700
IEA
PLAZA Integrative Orthologyheterocycle catabolic process SPAC1F3.01
GO:0006897
IEA
PLAZA Integrative Orthologyendocytosis WBGene00000796
GO:0044248
IEA
PLAZA Integrative Orthologycellular catabolic process SPAC1F3.01
GO:0006810
IEA
PLAZA Integrative Orthologytransport WBGene00000796
GO:0006378
IEA
PLAZA Integrative OrthologymRNA polyadenylation FBgn0038269
GO:0071042
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent mRNA catabolic process YOR001W
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism FBgn0038269
GO:0071043
IEA
PLAZA Integrative OrthologyCUT metabolic process YOR001W
GO:0071040
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent antisense transcript catabolic process YOR001W
GO:0006921
IEA
PLAZA Integrative Orthologycellular component disassembly involved in execution phase of apoptosis WBGene00000796
GO:0071041
IEA
PLAZA Integrative Orthologyantisense RNA transcript catabolic process YOR001W
GO:0032879
IEA
PLAZA Integrative Orthologyregulation of localization ENSG00000171824
GO:0071046
IEA
PLAZA Integrative Orthologynuclear polyadenylation-dependent ncRNA catabolic process SPAC1F3.01
GO:0071047
IEA
PLAZA Integrative Orthologypolyadenylation-dependent mRNA catabolic process YOR001W
GO:0071044
IEA
PLAZA Integrative Orthologyhistone mRNA catabolic process YOR001W
GO:0042592
IEA
PLAZA Integrative Orthologyhomeostatic process ENSG00000171824
GO:0051053
IEA
PLAZA Integrative Orthologynegative regulation of DNA metabolic process ENSG00000171824
GO:0034655
IEA
PLAZA Integrative Orthologynucleobase-containing compound catabolic process SPAC1F3.01
GO:0071048
IEA
PLAZA Integrative Orthologynuclear retention of unspliced pre-mRNA at the site of transcription ENSG00000171824
GO:0071049
IEA
PLAZA Integrative Orthologynuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription YOR001W
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus FBgn0038269
GO:0009057
IEA
PLAZA Integrative Orthologymacromolecule catabolic process SPAC1F3.01
GO:0009056
IEA
PLAZA Integrative Orthologycatabolic process SPAC1F3.01
GO:0007275
IEA
PLAZA Integrative Orthologymulticellular organism development WBGene00000796
GO:0048856
IEA
PLAZA Integrative Orthologyanatomical structure development WBGene00000796
GO:0009615
IEA
PLAZA Integrative Orthologyresponse to virus FBgn0038269
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus FBgn0038269
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus FBgn0038269
GO:0044265
IEA
PLAZA Integrative Orthologycellular macromolecule catabolic process SPAC1F3.01
GO:0010833
IEA
PLAZA Integrative Orthologytelomere maintenance via telomere lengthening ENSG00000171824
GO:0032502
IEA
PLAZA Integrative Orthologydevelopmental process WBGene00000796
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus FBgn0038269
GO:0032501
IEA
PLAZA Integrative Orthologymulticellular organismal process WBGene00000796
GO:1901575
IEA
PLAZA Integrative Orthologyorganic substance catabolic process SPAC1F3.01
GO:0022411
IEA
PLAZA Integrative Orthologycellular component disassembly WBGene00000796
GO:0007049
IEA
PLAZA Integrative Orthologycell cycle FBgn0038269
GO:0044270
IEA
PLAZA Integrative Orthologycellular nitrogen compound catabolic process SPAC1F3.01
GO:0051234
IEA
PLAZA Integrative Orthologyestablishment of localization WBGene00000796
GO:0031123
IEA
PLAZA Integrative OrthologyRNA 3'-end processing YOR001W
GO:0006909
IEA
PLAZA Integrative Orthologyphagocytosis WBGene00000796
GO:0031124
IEA
PLAZA Integrative OrthologymRNA 3'-end processing FBgn0038269
GO:0032210
IEA
PLAZA Integrative Orthologyregulation of telomere maintenance via telomerase ENSG00000171824
GO:0034476
IEA
PLAZA Integrative OrthologyU5 snRNA 3'-end processing YOR001W
GO:0032211
IEA
PLAZA Integrative Orthologynegative regulation of telomere maintenance via telomerase ENSG00000171824
GO:0012501
IEA
PLAZA Integrative Orthologyprogrammed cell death WBGene00000796
GO:0031125
IEA
PLAZA Integrative OrthologyrRNA 3'-end processing YOR001W
GO:0031126
IEA
PLAZA Integrative OrthologysnoRNA 3'-end processing YOR001W

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
ISS
Gene Ontologynucleic acid binding7
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
ISS
Gene Ontology3'-5' exonuclease activity7
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0000166
IEA
InterPronucleotide binding
GO:0003824
IEA
InterProcatalytic activity
GO:0000175
IMP
Gene Ontology3'-5'-exoribonuclease activity8 9
GO:0003727
IDA
Gene Ontologysingle-stranded RNA binding3 4
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding SPAC1F3.01
GO:0070034
IEA
PLAZA Integrative Orthologytelomerase RNA binding ENSG00000171824

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005622
ISS
Gene Ontologyintracellular7
GO:0005622
IEA
InterProintracellular
GO:0005730
IDA
Gene Ontologynucleolus8 9
GO:0005654
IDA
Gene Ontologynucleoplasm8 9
GO:0005634
IDA
ISM
Gene Ontologynucleus8 9 10
GO:1990251
IEA
PLAZA Integrative OrthologyMmi1 nuclear focus SPAC1F3.01
GO:0000178
IEA
PLAZA Integrative Orthologyexosome (RNase complex) SPAC1F3.01
GO:0000228
IEA
PLAZA Integrative Orthologynuclear chromosome SPAC1F3.01
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part AT5G35910
GO:0044451
IEA
PLAZA Integrative Orthologynucleoplasm part SPAC1F3.01
GO:0044454
IEA
PLAZA Integrative Orthologynuclear chromosome part SPAC1F3.01
GO:0005694
IEA
PLAZA Integrative Orthologychromosome SPAC1F3.01
GO:0000176
IEA
PLAZA Integrative Orthologynuclear exosome (RNase complex) YOR001W
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm AT5G35910
GO:0034399
IEA
PLAZA Integrative Orthologynuclear periphery FBgn0038269
GO:0016604
IEA
PLAZA Integrative Orthologynuclear body SPAC1F3.01
GO:0005829
IEA
PLAZA Integrative Orthologycytosol AT5G35910
GO:1905354
IEA
PLAZA Integrative Orthologyexoribonuclease complex SPAC1F3.01
GO:0000785
IEA
PLAZA Integrative Orthologychromatin SPAC1F3.01
GO:0000790
IEA
PLAZA Integrative Orthologynuclear chromatin SPAC1F3.01
GO:0032991
IEA
PLAZA Integrative Orthologyprotein-containing complex SPAC1F3.01
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex SPAC1F3.01
GO:0005652
IEA
PLAZA Integrative Orthologynuclear lamina FBgn0038269
GO:0044427
IEA
PLAZA Integrative Orthologychromosomal part SPAC1F3.01
GO:0016020
IEA
PLAZA Integrative Orthologymembrane ENSG00000171824
GO:0035327
IEA
PLAZA Integrative Orthologytranscriptionally active chromatin ENSG00000171824

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012337Ribonuclease H-like superfamily
IPR0025623'-5' exonuclease domain
IPR002121HRDC domain
IPR010997HRDC-like superfamily

No MapMan annotations defined for this gene.
KeggID Description
K12591RRP6, EXOSC10; exosome complex exonuclease RRP6 [EC:3.1.13.-]
No chloroplast target sequence found.