PLAZA diatoms 1.0 gene overview : AT1G19750

Gene: AT1G19750 (Arabidopsis thaliana)

Overview

Gene Identifier: AT1G19750
Transcript Identifier: AT1G19750.1
Gene Type: Coding gene
Location: 1 : 6826997-6830061 : positive

Family Information

Homologous gene family: HOM02SEM003668
(21 genes in 18 species)
specific family

Descriptions

Description: Transducin/WD40 repeat-like superfamily protein

Identifiers

Type	Value

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Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0071704	IEA	PLAZA Integrative Orthology	organic substance metabolic process	SPBC577.09
GO:0051716	IEA	PLAZA Integrative Orthology	cellular response to stimulus	SPBC577.09
GO:0006508	IEA	PLAZA Integrative Orthology	proteolysis	ENSG00000049167
GO:0006511	IEA	PLAZA Integrative Orthology	ubiquitin-dependent protein catabolic process	ENSG00000049167
GO:0009987	IEA	PLAZA Integrative Orthology	cellular process	SPBC577.09
GO:0006950	IEA	PLAZA Integrative Orthology	response to stress	SPBC577.09
GO:0043412	IEA	PLAZA Integrative Orthology	macromolecule modification	ENSG00000049167
GO:1901575	IEA	PLAZA Integrative Orthology	organic substance catabolic process	ENSG00000049167
GO:0044267	IEA	PLAZA Integrative Orthology	cellular protein metabolic process	ENSG00000049167
GO:0030163	IEA	PLAZA Integrative Orthology	protein catabolic process	ENSG00000049167
GO:0000209	IEA	PLAZA Integrative Orthology	protein polyubiquitination	ENSG00000049167
GO:0051865	IEA	PLAZA Integrative Orthology	protein autoubiquitination	ENSG00000049167
GO:0050896	IEA	PLAZA Integrative Orthology	response to stimulus	SPBC577.09
GO:0019941	IEA	PLAZA Integrative Orthology	modification-dependent protein catabolic process	ENSG00000049167
GO:0034641	IEA	PLAZA Integrative Orthology	cellular nitrogen compound metabolic process	SPBC577.09
GO:0033554	IEA	PLAZA Integrative Orthology	cellular response to stress	SPBC577.09
GO:0044265	IEA	PLAZA Integrative Orthology	cellular macromolecule catabolic process	ENSG00000049167
GO:0044260	IEA	PLAZA Integrative Orthology	cellular macromolecule metabolic process	SPBC577.09
GO:0006979	IEA	PLAZA Integrative Orthology	response to oxidative stress	ENSG00000049167
GO:0046483	IEA	PLAZA Integrative Orthology	heterocycle metabolic process	SPBC577.09
GO:0043170	IEA	PLAZA Integrative Orthology	macromolecule metabolic process	SPBC577.09
GO:0043687	IEA	PLAZA Integrative Orthology	post-translational protein modification	ENSG00000049167
GO:0009416	IEA	PLAZA Integrative Orthology	response to light stimulus	AT1G27840
GO:0044257	IEA	PLAZA Integrative Orthology	cellular protein catabolic process	ENSG00000049167
GO:0009411	IEA	PLAZA Integrative Orthology	response to UV	AT1G27840
GO:1901564	IEA	PLAZA Integrative Orthology	organonitrogen compound metabolic process	ENSG00000049167
GO:1901565	IEA	PLAZA Integrative Orthology	organonitrogen compound catabolic process	ENSG00000049167
GO:0006464	IEA	PLAZA Integrative Orthology	cellular protein modification process	ENSG00000049167
GO:0009056	IEA	PLAZA Integrative Orthology	catabolic process	ENSG00000049167
GO:0009057	IEA	PLAZA Integrative Orthology	macromolecule catabolic process	ENSG00000049167
GO:1901360	IEA	PLAZA Integrative Orthology	organic cyclic compound metabolic process	SPBC577.09
GO:0019538	IEA	PLAZA Integrative Orthology	protein metabolic process	ENSG00000049167
GO:0016567	IEA	PLAZA Integrative Orthology	protein ubiquitination	ENSG00000049167
GO:0010224	IEA	PLAZA Integrative Orthology	response to UV-B	AT1G27840
GO:0006807	IEA	PLAZA Integrative Orthology	nitrogen compound metabolic process	SPBC577.09
GO:0043161	IEA	PLAZA Integrative Orthology	proteasome-mediated ubiquitin-dependent protein catabolic process	ENSG00000049167
GO:0006725	IEA	PLAZA Integrative Orthology	cellular aromatic compound metabolic process	SPBC577.09
GO:0044248	IEA	PLAZA Integrative Orthology	cellular catabolic process	ENSG00000049167
GO:0043632	IEA	PLAZA Integrative Orthology	modification-dependent macromolecule catabolic process	ENSG00000049167
GO:0006139	IEA	PLAZA Integrative Orthology	nucleobase-containing compound metabolic process	SPBC577.09
GO:0006974	IEA	PLAZA Integrative Orthology	cellular response to DNA damage stimulus	SPBC577.09
GO:0006259	IEA	PLAZA Integrative Orthology	DNA metabolic process	SPBC577.09
GO:0008152	IEA	PLAZA Integrative Orthology	metabolic process	SPBC577.09
GO:0090304	IEA	PLAZA Integrative Orthology	nucleic acid metabolic process	SPBC577.09
GO:0010498	IEA	PLAZA Integrative Orthology	proteasomal protein catabolic process	ENSG00000049167
GO:0032446	IEA	PLAZA Integrative Orthology	protein modification by small protein conjugation	ENSG00000049167
GO:0051603	IEA	PLAZA Integrative Orthology	proteolysis involved in cellular protein catabolic process	ENSG00000049167
GO:0070647	IEA	PLAZA Integrative Orthology	protein modification by small protein conjugation or removal	ENSG00000049167
GO:0009628	IEA	PLAZA Integrative Orthology	response to abiotic stimulus	AT1G27840
GO:0044237	IEA	PLAZA Integrative Orthology	cellular metabolic process	SPBC577.09
GO:0044238	IEA	PLAZA Integrative Orthology	primary metabolic process	SPBC577.09
GO:0006289	IEA	PLAZA Integrative Orthology	nucleotide-excision repair	SPBC577.09
GO:0009314	IEA	PLAZA Integrative Orthology	response to radiation	AT1G27840
GO:0006283	IEA	PLAZA Integrative Orthology	transcription-coupled nucleotide-excision repair	SPBC577.09
GO:0036211	IEA	PLAZA Integrative Orthology	protein modification process	ENSG00000049167
GO:0006281	IEA	PLAZA Integrative Orthology	DNA repair	SPBC577.09

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0000166	ISS	Gene Ontology	nucleotide binding	1
GO:0016787	IEA	PLAZA Integrative Orthology	hydrolase activity	ENSG00000049167
GO:0016740	IEA	PLAZA Integrative Orthology	transferase activity	ENSG00000049167
GO:0017111	IEA	PLAZA Integrative Orthology	nucleoside-triphosphatase activity	ENSG00000049167
GO:0016462	IEA	PLAZA Integrative Orthology	pyrophosphatase activity	ENSG00000049167
GO:0003678	IEA	PLAZA Integrative Orthology	DNA helicase activity	ENSG00000049167
GO:0004842	IEA	PLAZA Integrative Orthology	ubiquitin-protein transferase activity	ENSG00000049167
GO:0016818	IEA	PLAZA Integrative Orthology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	ENSG00000049167
GO:0016817	IEA	PLAZA Integrative Orthology	hydrolase activity, acting on acid anhydrides	ENSG00000049167
GO:0140097	IEA	PLAZA Integrative Orthology	catalytic activity, acting on DNA	ENSG00000049167
GO:0008094	IEA	PLAZA Integrative Orthology	DNA-dependent ATPase activity	ENSG00000049167
GO:0140096	IEA	PLAZA Integrative Orthology	catalytic activity, acting on a protein	ENSG00000049167
GO:0019787	IEA	PLAZA Integrative Orthology	ubiquitin-like protein transferase activity	ENSG00000049167
GO:0003824	IEA	PLAZA Integrative Orthology	catalytic activity	ENSG00000049167
GO:0042623	IEA	PLAZA Integrative Orthology	ATPase activity, coupled	ENSG00000049167
GO:0044877	IEA	PLAZA Integrative Orthology	protein-containing complex binding	ENSG00000049167
GO:0004386	IEA	PLAZA Integrative Orthology	helicase activity	ENSG00000049167
GO:0016887	IEA	PLAZA Integrative Orthology	ATPase activity	ENSG00000049167

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0080008	ISS	Gene Ontology	Cul4-RING E3 ubiquitin ligase complex	2 3 4 5
GO:0005834	ISS	Gene Ontology	heterotrimeric G-protein complex	1
GO:0005737	ISM	Gene Ontology	cytoplasm	6
GO:0005634	ISM	Gene Ontology	nucleus	6
GO:0034399	IEA	PLAZA Integrative Orthology	nuclear periphery	ENSG00000049167
GO:0070013	IEA	PLAZA Integrative Orthology	intracellular organelle lumen	ENSG00000049167
GO:0044422	IEA	PLAZA Integrative Orthology	organelle part	SPBC577.09
GO:0044428	IEA	PLAZA Integrative Orthology	nuclear part	SPBC577.09
GO:0031974	IEA	PLAZA Integrative Orthology	membrane-enclosed lumen	ENSG00000049167
GO:0005654	IEA	PLAZA Integrative Orthology	nucleoplasm	ENSG00000049167
GO:1990391	IEA	PLAZA Integrative Orthology	DNA repair complex	SPBC577.09
GO:0070912	IEA	PLAZA Integrative Orthology	Ddb1-Ckn1 complex	SPBC577.09
GO:0016363	IEA	PLAZA Integrative Orthology	nuclear matrix	ENSG00000049167
GO:0031464	IEA	PLAZA Integrative Orthology	Cul4A-RING E3 ubiquitin ligase complex	ENSG00000049167
GO:0031981	IEA	PLAZA Integrative Orthology	nuclear lumen	ENSG00000049167
GO:0044446	IEA	PLAZA Integrative Orthology	intracellular organelle part	SPBC577.09
GO:0044444	IEA	PLAZA Integrative Orthology	cytoplasmic part	SPBC577.09
GO:0043233	IEA	PLAZA Integrative Orthology	organelle lumen	ENSG00000049167
GO:0000109	IEA	PLAZA Integrative Orthology	nucleotide-excision repair complex	SPBC577.09
GO:0005829	IEA	PLAZA Integrative Orthology	cytosol	SPBC577.09

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR001680	WD40 repeat
IPR020472	G-protein beta WD-40 repeat
IPR019775	WD40 repeat, conserved site
IPR017986	WD40-repeat-containing domain

No MapMan annotations defined for this gene.

KeggID	Description
K10570	ERCC8, CKN1, CSA; DNA excision repair protein ERCC-8

No chloroplast target sequence found.