Gene: AT1G15440 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G15440
Transcript Identifier
AT1G15440.1
Gene Type
Coding gene
Location
1 : 5306159-5309460 : negative

Family Information

Homologous gene family
HOM02SEM002283
(30 genes in 25 species)
specific family
Orthologous gene family
ORTHO02SEM002697
(28 genes in 24 species)
specific family

Descriptions

Description
periodic tryptophan protein 2
Curated Summary
Encodes a nucleolar protein that is a ribosome biogenesis co-factor. Mutants display aberrant RNA processing and female gametophyte development.
Show more...

Identifiers

Type Value
aliasATPWP2
aliasPERIODIC TRYPTOPHAN PROTEIN 2
aliasPWP2

Toolbox

Explore

Create

View

Browse

 

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009553
IMP
Gene Ontologyembryo sac development1 2
GO:0006364
IMP
Gene OntologyrRNA processing1 2
GO:0010119
IMP
Gene Ontologyregulation of stomatal movement3 4
GO:0009744
IEP
Gene Ontologyresponse to sucrose3 4
GO:0034471
IEA
PLAZA Integrative OrthologyncRNA 5'-end processing YCR057C
GO:0009991
IEA
PLAZA Integrative Orthologyresponse to extracellular stimulus FBgn0033557
GO:0022008
IEA
PLAZA Integrative Orthologyneurogenesis FBgn0033557
GO:0000462
IEA
PLAZA Integrative Orthologymaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0000460
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA YCR057C
GO:0071496
IEA
PLAZA Integrative Orthologycellular response to external stimulus FBgn0033557
GO:0090502
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis, endonucleolytic YCR057C
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis YCR057C
GO:0090501
IEA
PLAZA Integrative OrthologyRNA phosphodiester bond hydrolysis YCR057C
GO:0000469
IEA
PLAZA Integrative Orthologycleavage involved in rRNA processing YCR057C
GO:0000466
IEA
PLAZA Integrative Orthologymaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0000472
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0031668
IEA
PLAZA Integrative Orthologycellular response to extracellular stimulus FBgn0033557
GO:0031669
IEA
PLAZA Integrative Orthologycellular response to nutrient levels FBgn0033557
GO:0048731
IEA
PLAZA Integrative Orthologysystem development FBgn0033557
GO:0042274
IEA
PLAZA Integrative Orthologyribosomal small subunit biogenesis YCR057C
GO:0030010
IEA
PLAZA Integrative Orthologyestablishment of cell polarity YCR057C
GO:0031667
IEA
PLAZA Integrative Orthologyresponse to nutrient levels FBgn0033557
GO:0030490
IEA
PLAZA Integrative Orthologymaturation of SSU-rRNA YCR057C
GO:0007154
IEA
PLAZA Integrative Orthologycell communication FBgn0033557
GO:0007399
IEA
PLAZA Integrative Orthologynervous system development FBgn0033557
GO:0042594
IEA
PLAZA Integrative Orthologyresponse to starvation FBgn0033557
GO:0000479
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0000478
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage involved in rRNA processing YCR057C
GO:0051301
IEA
PLAZA Integrative Orthologycell division YCR057C
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus FBgn0033557
GO:0000480
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0033554
IEA
PLAZA Integrative Orthologycellular response to stress FBgn0033557
GO:0000967
IEA
PLAZA Integrative OrthologyrRNA 5'-end processing YCR057C
GO:0007163
IEA
PLAZA Integrative Orthologyestablishment or maintenance of cell polarity YCR057C
GO:0000966
IEA
PLAZA Integrative OrthologyRNA 5'-end processing YCR057C
GO:0000447
IEA
PLAZA Integrative Orthologyendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) YCR057C
GO:0000920
IEA
PLAZA Integrative Orthologyseptum digestion after cytokinesis YCR057C
GO:0009267
IEA
PLAZA Integrative Orthologycellular response to starvation FBgn0033557
GO:0048869
IEA
PLAZA Integrative Orthologycellular developmental process FBgn0033557
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress FBgn0033557
GO:0030154
IEA
PLAZA Integrative Orthologycell differentiation FBgn0033557
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus FBgn0033557

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5 6
GO:0005515
IEA
InterProprotein binding
GO:0000166
ISS
Gene Ontologynucleotide binding7
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding YCR057C
GO:0003729
IEA
PLAZA Integrative OrthologymRNA binding YCR057C
GO:0003676
IEA
PLAZA Integrative Orthologynucleic acid binding YCR057C
GO:0030515
IEA
PLAZA Integrative OrthologysnoRNA binding YCR057C

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IDA
Gene Ontologynucleolus1 2
GO:0005634
IDA
ISM
Gene Ontologynucleus5 6 8
GO:0080008
ISS
Gene OntologyCul4-RING E3 ubiquitin ligase complex9 10 11 12
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPBC713.04c
GO:0034388
IEA
PLAZA Integrative OrthologyPwp2p-containing subcomplex of 90S preribosome YCR057C
GO:0032040
IEA
PLAZA Integrative Orthologysmall-subunit processome YCR057C
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPBC713.04c
GO:0044452
IEA
PLAZA Integrative Orthologynucleolar part YCR057C
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm ENSG00000241945
GO:0030684
IEA
PLAZA Integrative Orthologypreribosome YCR057C
GO:1990904
IEA
PLAZA Integrative Orthologyribonucleoprotein complex YCR057C
GO:0030686
IEA
PLAZA Integrative Orthology90S preribosome YCR057C
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPBC713.04c

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR015943WD40/YVTN repeat-like-containing domain superfamily
IPR027145Periodic tryptophan protein 2
IPR007148Small-subunit processome, Utp12
IPR001680WD40 repeat
IPR020472G-protein beta WD-40 repeat
IPR019775WD40 repeat, conserved site
IPR017986WD40-repeat-containing domain
IPR011047Quinoprotein alcohol dehydrogenase-like superfamily

No MapMan annotations defined for this gene.
KeggID Description
K14558PWP2, UTP1; periodic tryptophan protein 2
No chloroplast target sequence found.