Gene: AT1G12260 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT1G12260
Transcript Identifier
AT1G12260.1
Gene Type
Coding gene
Location
1 : 4163058-4164486 : negative

Family Information

Homologous gene family
HOM02SEM000239
(124 genes in 2 species)
specific family
Orthologous gene family
ORTHO02SEM006672
(12 genes in 2 species)
specific family
Duplication type
Block duplicate

Descriptions

Curated Summary
Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.
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Identifiers

Type Value
uniprotQ9FWX2
PlnTFDBNAC
aliasNAC 007
aliasVND4
aliasNAC007
aliasANAC007
aliasVASCULAR RELATED NAC-DOMAIN PROTEIN 4
aliasEMBRYO DEFECTIVE 2749
aliasEMB2749

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IMP
TAS
Gene Ontologyregulation of transcription, DNA-templated1 2 3 4
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy5
GO:1901348
IMP
Gene Ontologypositive regulation of secondary cell wall biogenesis3 4
GO:0048759
IMP
Gene Ontologyxylem vessel member cell differentiation3 4
GO:0010047
IEA
PLAZA Integrative Orthologyfruit dehiscence AT2G46770
GO:0012501
IEA
PLAZA Integrative Orthologyprogrammed cell death AT5G62380
GO:0010200
IEA
PLAZA Integrative Orthologyresponse to chitin AT2G18060
GO:0044550
IEA
PLAZA Integrative Orthologysecondary metabolite biosynthetic process AT2G46770
GO:0042493
IEA
PLAZA Integrative Orthologyresponse to drug AT2G18060
GO:0010604
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule metabolic process AT5G62380
GO:0009737
IEA
PLAZA Integrative Orthologyresponse to abscisic acid AT5G62380
GO:1903508
IEA
PLAZA Integrative Orthologypositive regulation of nucleic acid-templated transcription AT5G62380
GO:0001101
IEA
PLAZA Integrative Orthologyresponse to acid chemical AT5G62380
GO:0009900
IEA
PLAZA Integrative Orthologydehiscence AT2G46770
GO:0009901
IEA
PLAZA Integrative Orthologyanther dehiscence AT2G46770
GO:1901698
IEA
PLAZA Integrative Orthologyresponse to nitrogen compound AT2G18060
GO:0009741
IEA
PLAZA Integrative Orthologyresponse to brassinosteroid AT5G62380
GO:0009620
IEA
PLAZA Integrative Orthologyresponse to fungus AT5G62380
GO:0050896
IEA
PLAZA Integrative Orthologyresponse to stimulus AT5G62380
GO:0010557
IEA
PLAZA Integrative Orthologypositive regulation of macromolecule biosynthetic process AT5G62380
GO:0097305
IEA
PLAZA Integrative Orthologyresponse to alcohol AT5G62380
GO:0048466
IEA
PLAZA Integrative Orthologyandroecium development AT2G46770
GO:0009605
IEA
PLAZA Integrative Orthologyresponse to external stimulus AT5G62380
GO:0032504
IEA
PLAZA Integrative Orthologymulticellular organism reproduction AT2G46770
GO:0009607
IEA
PLAZA Integrative Orthologyresponse to biotic stimulus AT5G62380
GO:1990110
IEA
PLAZA Integrative Orthologycallus formation AT2G18060
GO:0009733
IEA
PLAZA Integrative Orthologyresponse to auxin AT5G62380
GO:0009735
IEA
PLAZA Integrative Orthologyresponse to cytokinin AT5G62380
GO:0009698
IEA
PLAZA Integrative Orthologyphenylpropanoid metabolic process AT2G46770
GO:0009699
IEA
PLAZA Integrative Orthologyphenylpropanoid biosynthetic process AT2G46770
GO:0009611
IEA
PLAZA Integrative Orthologyresponse to wounding AT2G18060
GO:0043207
IEA
PLAZA Integrative Orthologyresponse to external biotic stimulus AT5G62380
GO:0010981
IEA
PLAZA Integrative Orthologyregulation of cell wall macromolecule metabolic process AT5G62380
GO:0032870
IEA
PLAZA Integrative Orthologycellular response to hormone stimulus AT1G71930
GO:0010628
IEA
PLAZA Integrative Orthologypositive regulation of gene expression AT5G62380
GO:0098542
IEA
PLAZA Integrative Orthologydefense response to other organism AT1G71930
GO:0042221
IEA
PLAZA Integrative Orthologyresponse to chemical AT5G62380
GO:0048609
IEA
PLAZA Integrative Orthologymulticellular organismal reproductive process AT2G46770
GO:0070887
IEA
PLAZA Integrative Orthologycellular response to chemical stimulus AT1G71930
GO:0048443
IEA
PLAZA Integrative Orthologystamen development AT2G46770
GO:0009908
IEA
PLAZA Integrative Orthologyflower development AT2G46770
GO:0042060
IEA
PLAZA Integrative Orthologywound healing AT2G18060
GO:1901700
IEA
PLAZA Integrative Orthologyresponse to oxygen-containing compound AT5G62380
GO:0048437
IEA
PLAZA Integrative Orthologyfloral organ development AT2G46770
GO:0051173
IEA
PLAZA Integrative Orthologypositive regulation of nitrogen compound metabolic process AT5G62380
GO:0048438
IEA
PLAZA Integrative Orthologyfloral whorl development AT2G46770
GO:0010243
IEA
PLAZA Integrative Orthologyresponse to organonitrogen compound AT2G18060
GO:0031325
IEA
PLAZA Integrative Orthologypositive regulation of cellular metabolic process AT5G62380
GO:0051716
IEA
PLAZA Integrative Orthologycellular response to stimulus AT1G71930
GO:0031328
IEA
PLAZA Integrative Orthologypositive regulation of cellular biosynthetic process AT5G62380
GO:0005975
IEA
PLAZA Integrative Orthologycarbohydrate metabolic process AT5G62380
GO:0005976
IEA
PLAZA Integrative Orthologypolysaccharide metabolic process AT5G62380
GO:0006950
IEA
PLAZA Integrative Orthologyresponse to stress AT2G18060
GO:0006952
IEA
PLAZA Integrative Orthologydefense response AT1G71930
GO:0048827
IEA
PLAZA Integrative Orthologyphyllome development AT2G46770
GO:0090567
IEA
PLAZA Integrative Orthologyreproductive shoot system development AT2G46770
GO:0048829
IEA
PLAZA Integrative Orthologyroot cap development AT1G33280
GO:0051704
IEA
PLAZA Integrative Orthologymulti-organism process AT5G62380
GO:0033993
IEA
PLAZA Integrative Orthologyresponse to lipid AT5G62380
GO:0009808
IEA
PLAZA Integrative Orthologylignin metabolic process AT2G46770
GO:0099402
IEA
PLAZA Integrative Orthologyplant organ development AT1G33280
GO:0009809
IEA
PLAZA Integrative Orthologylignin biosynthetic process AT2G46770
GO:0071310
IEA
PLAZA Integrative Orthologycellular response to organic substance AT1G71930
GO:0022622
IEA
PLAZA Integrative Orthologyroot system development AT1G33280
GO:0009891
IEA
PLAZA Integrative Orthologypositive regulation of biosynthetic process AT5G62380
GO:0051707
IEA
PLAZA Integrative Orthologyresponse to other organism AT5G62380
GO:0009893
IEA
PLAZA Integrative Orthologypositive regulation of metabolic process AT5G62380
GO:0010942
IEA
PLAZA Integrative Orthologypositive regulation of cell death AT5G62380
GO:0010941
IEA
PLAZA Integrative Orthologyregulation of cell death AT5G62380
GO:0009719
IEA
PLAZA Integrative Orthologyresponse to endogenous stimulus AT5G62380
GO:0048653
IEA
PLAZA Integrative Orthologyanther development AT2G46770
GO:0051254
IEA
PLAZA Integrative Orthologypositive regulation of RNA metabolic process AT5G62380
GO:0071365
IEA
PLAZA Integrative Orthologycellular response to auxin stimulus AT1G71930
GO:0009725
IEA
PLAZA Integrative Orthologyresponse to hormone AT5G62380
GO:0014070
IEA
PLAZA Integrative Orthologyresponse to organic cyclic compound AT5G62380
GO:0045935
IEA
PLAZA Integrative Orthologypositive regulation of nucleobase-containing compound metabolic process AT5G62380
GO:0010033
IEA
PLAZA Integrative Orthologyresponse to organic substance AT5G62380
GO:0019748
IEA
PLAZA Integrative Orthologysecondary metabolic process AT2G46770
GO:1902680
IEA
PLAZA Integrative Orthologypositive regulation of RNA biosynthetic process AT5G62380
GO:0010410
IEA
PLAZA Integrative Orthologyhemicellulose metabolic process AT5G62380
GO:0050832
IEA
PLAZA Integrative Orthologydefense response to fungus AT1G71930
GO:0071495
IEA
PLAZA Integrative Orthologycellular response to endogenous stimulus AT1G71930
GO:0048367
IEA
PLAZA Integrative Orthologyshoot system development AT2G46770
GO:0045893
IEA
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT5G62380
GO:0045491
IEA
PLAZA Integrative Orthologyxylan metabolic process AT5G62380
GO:0008219
IEA
PLAZA Integrative Orthologycell death AT5G62380
GO:0048364
IEA
PLAZA Integrative Orthologyroot development AT1G33280
GO:0043067
IEA
PLAZA Integrative Orthologyregulation of programmed cell death AT5G62380
GO:0044036
IEA
PLAZA Integrative Orthologycell wall macromolecule metabolic process AT5G62380
GO:0043068
IEA
PLAZA Integrative Orthologypositive regulation of programmed cell death AT5G62380
GO:0090059
IEA
PLAZA Integrative Orthologyprotoxylem development AT1G71930
GO:0090058
IEA
PLAZA Integrative Orthologymetaxylem development AT5G62380
GO:0010383
IEA
PLAZA Integrative Orthologycell wall polysaccharide metabolic process AT5G62380

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0005515
IPI
Gene Ontologyprotein binding6 7
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1 2
GO:0001067
IEA
PLAZA Integrative Orthologyregulatory region nucleic acid binding AT2G18060
GO:0042803
IEA
PLAZA Integrative Orthologyprotein homodimerization activity AT5G62380
GO:0042802
IEA
PLAZA Integrative Orthologyidentical protein binding AT5G62380
GO:0043565
IEA
PLAZA Integrative Orthologysequence-specific DNA binding AT4G36160
GO:0044212
IEA
PLAZA Integrative Orthologytranscription regulatory region DNA binding AT2G18060
GO:0046983
IEA
PLAZA Integrative Orthologyprotein dimerization activity AT5G62380
GO:0046982
IEA
PLAZA Integrative Orthologyprotein heterodimerization activity AT1G71930

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus8
GO:0030312
IEA
PLAZA Integrative Orthologyexternal encapsulating structure AT5G62380
GO:0009505
IEA
PLAZA Integrative Orthologyplant-type cell wall AT5G62380
GO:0071944
IEA
PLAZA Integrative Orthologycell periphery AT5G62380
GO:0005618
IEA
PLAZA Integrative Orthologycell wall AT5G62380
GO:0009531
IEA
PLAZA Integrative Orthologysecondary cell wall AT5G62380

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003441NAC domain

No MapMan annotations defined for this gene.
No Kegg annotations defined for this gene.
No chloroplast target sequence found.