Gene: AA0004G04900 (Aureococcus anophagefferens)

Overview top

Gene Identifier
AA0004G04900
Transcript Identifier
AA0004G04900.1
Gene Type
Coding gene
Location
scaffold_4 : 2465745-2466863 : positive

Family Information

Homologous gene family
HOM02SEM002590
(28 genes in 21 species)
specific family

Descriptions

Identifiers

Type Value
protein_id58771
namefgenesh2_pm.C_scaffold_4000054

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Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006281
IEA
InterProDNA repair
GO:0006283
IEA
PLAZA Integrative Orthologytranscription-coupled nucleotide-excision repair ENSG00000145736
GO:0009314
IEA
PLAZA Integrative Orthologyresponse to radiation ENSG00000145736
GO:0051095
IEA
PLAZA Integrative Orthologyregulation of helicase activity ENSG00000145736
GO:0051096
IEA
PLAZA Integrative Orthologypositive regulation of helicase activity ENSG00000145736
GO:0048519
IEA
PLAZA Integrative Orthologynegative regulation of biological process ENSG00000145736
GO:0023058
IEA
PLAZA Integrative Orthologyadaptation of signaling pathway ENSG00000145736
GO:0048518
IEA
PLAZA Integrative Orthologypositive regulation of biological process ENSG00000145736
GO:0022401
IEA
PLAZA Integrative Orthologynegative adaptation of signaling pathway ENSG00000145736
GO:0050794
IEA
PLAZA Integrative Orthologyregulation of cellular process AT1G05055
GO:0048522
IEA
PLAZA Integrative Orthologypositive regulation of cellular process ENSG00000145736
GO:0050790
IEA
PLAZA Integrative Orthologyregulation of catalytic activity ENSG00000145736
GO:0034622
IEA
PLAZA Integrative Orthologycellular protein-containing complex assembly ENSG00000145736
GO:2000112
IEA
PLAZA Integrative Orthologyregulation of cellular macromolecule biosynthetic process AT1G05055
GO:0051128
IEA
PLAZA Integrative Orthologyregulation of cellular component organization ENSG00000145736
GO:0065007
IEA
PLAZA Integrative Orthologybiological regulation AT1G05055
GO:0065003
IEA
PLAZA Integrative Orthologyprotein-containing complex assembly ENSG00000145736
GO:0006295
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision, 3'-to lesion ENSG00000275045
GO:0006296
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision, 5'-to lesion ENSG00000145736
GO:0065004
IEA
PLAZA Integrative Orthologyprotein-DNA complex assembly ENSG00000145736
GO:0006293
IEA
PLAZA Integrative Orthologynucleotide-excision repair, preincision complex stabilization ENSG00000145736
GO:0006294
IEA
PLAZA Integrative Orthologynucleotide-excision repair, preincision complex assembly ENSG00000145736
GO:0043112
IEA
PLAZA Integrative Orthologyreceptor metabolic process ENSG00000145736
GO:0048523
IEA
PLAZA Integrative Orthologynegative regulation of cellular process ENSG00000145736
GO:0009966
IEA
PLAZA Integrative Orthologyregulation of signal transduction ENSG00000145736
GO:0065009
IEA
PLAZA Integrative Orthologyregulation of molecular function ENSG00000145736
GO:0023057
IEA
PLAZA Integrative Orthologynegative regulation of signaling ENSG00000145736
GO:0023051
IEA
PLAZA Integrative Orthologyregulation of signaling ENSG00000145736
GO:0043085
IEA
PLAZA Integrative Orthologypositive regulation of catalytic activity ENSG00000145736
GO:0051130
IEA
PLAZA Integrative Orthologypositive regulation of cellular component organization ENSG00000145736
GO:0051252
IEA
PLAZA Integrative Orthologyregulation of RNA metabolic process AT1G05055
GO:0023052
IEA
PLAZA Integrative Orthologysignaling ENSG00000145736
GO:0031623
IEA
PLAZA Integrative Orthologyreceptor internalization ENSG00000145736
GO:0019219
IEA
PLAZA Integrative Orthologyregulation of nucleobase-containing compound metabolic process AT1G05055
GO:0032392
IEA
PLAZA Integrative OrthologyDNA geometric change ENSG00000145736
GO:0000717
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA duplex unwinding ENSG00000275045
GO:0009411
IEA
PLAZA Integrative Orthologyresponse to UV ENSG00000145736
GO:0009416
IEA
PLAZA Integrative Orthologyresponse to light stimulus ENSG00000145736
GO:0016071
IEA
PLAZA Integrative OrthologymRNA metabolic process ENSG00000145736
GO:0016192
IEA
PLAZA Integrative Orthologyvesicle-mediated transport ENSG00000145736
GO:0010638
IEA
PLAZA Integrative Orthologypositive regulation of organelle organization ENSG00000145736
GO:0019222
IEA
PLAZA Integrative Orthologyregulation of metabolic process AT1G05055
GO:0031334
IEA
PLAZA Integrative Orthologypositive regulation of protein complex assembly ENSG00000145736
GO:0043933
IEA
PLAZA Integrative Orthologyprotein-containing complex subunit organization ENSG00000145736
GO:0060255
IEA
PLAZA Integrative Orthologyregulation of macromolecule metabolic process AT1G05055
GO:0043254
IEA
PLAZA Integrative Orthologyregulation of protein complex assembly ENSG00000145736
GO:0006396
IEA
PLAZA Integrative OrthologyRNA processing ENSG00000145736
GO:0006793
IEA
PLAZA Integrative Orthologyphosphorus metabolic process YLR005W
GO:0006397
IEA
PLAZA Integrative OrthologymRNA processing ENSG00000145736
GO:0043412
IEA
PLAZA Integrative Orthologymacromolecule modification YLR005W
GO:0006796
IEA
PLAZA Integrative Orthologyphosphate-containing compound metabolic process YLR005W
GO:0010648
IEA
PLAZA Integrative Orthologynegative regulation of cell communication ENSG00000145736
GO:0051276
IEA
PLAZA Integrative Orthologychromosome organization ENSG00000145736
GO:0010646
IEA
PLAZA Integrative Orthologyregulation of cell communication ENSG00000145736
GO:0071824
IEA
PLAZA Integrative Orthologyprotein-DNA complex subunit organization ENSG00000145736
GO:0031326
IEA
PLAZA Integrative Orthologyregulation of cellular biosynthetic process AT1G05055
GO:0080090
IEA
PLAZA Integrative Orthologyregulation of primary metabolic process AT1G05055
GO:0031323
IEA
PLAZA Integrative Orthologyregulation of cellular metabolic process AT1G05055
GO:1905464
IEA
PLAZA Integrative Orthologypositive regulation of DNA duplex unwinding ENSG00000145736
GO:0036211
IEA
PLAZA Integrative Orthologyprotein modification process YLR005W
GO:1905462
IEA
PLAZA Integrative Orthologyregulation of DNA duplex unwinding ENSG00000145736
GO:2001252
IEA
PLAZA Integrative Orthologypositive regulation of chromosome organization ENSG00000145736
GO:0006361
IEA
PLAZA Integrative Orthologytranscription initiation from RNA polymerase I promoter ENSG00000145736
GO:0006362
IEA
PLAZA Integrative Orthologytranscription elongation from RNA polymerase I promoter ENSG00000275045
GO:0006360
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase I ENSG00000145736
GO:0022607
IEA
PLAZA Integrative Orthologycellular component assembly ENSG00000145736
GO:0006366
IEA
PLAZA Integrative Orthologytranscription by RNA polymerase II SPCC1682.07
GO:0006363
IEA
PLAZA Integrative Orthologytermination of RNA polymerase I transcription ENSG00000145736
GO:0051171
IEA
PLAZA Integrative Orthologyregulation of nitrogen compound metabolic process AT1G05055
GO:0006367
IEA
PLAZA Integrative Orthologytranscription initiation from RNA polymerase II promoter SPCC1682.07
GO:0006368
IEA
PLAZA Integrative Orthologytranscription elongation from RNA polymerase II promoter ENSG00000145736
GO:0044085
IEA
PLAZA Integrative Orthologycellular component biogenesis ENSG00000145736
GO:0009628
IEA
PLAZA Integrative Orthologyresponse to abiotic stimulus ENSG00000145736
GO:0044087
IEA
PLAZA Integrative Orthologyregulation of cellular component biogenesis ENSG00000145736
GO:0098657
IEA
PLAZA Integrative Orthologyimport into cell ENSG00000145736
GO:0044089
IEA
PLAZA Integrative Orthologypositive regulation of cellular component biogenesis ENSG00000145736
GO:2001141
IEA
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT1G05055
GO:0090305
IEA
PLAZA Integrative Orthologynucleic acid phosphodiester bond hydrolysis ENSG00000145736
GO:0007186
IEA
PLAZA Integrative OrthologyG protein-coupled receptor signaling pathway ENSG00000145736
GO:0006370
IEA
PLAZA Integrative Orthology7-methylguanosine mRNA capping ENSG00000145736
GO:0008277
IEA
PLAZA Integrative Orthologyregulation of G protein-coupled receptor signaling pathway ENSG00000145736
GO:0006897
IEA
PLAZA Integrative Orthologyendocytosis ENSG00000145736
GO:0009889
IEA
PLAZA Integrative Orthologyregulation of biosynthetic process AT1G05055
GO:0006898
IEA
PLAZA Integrative Orthologyreceptor-mediated endocytosis ENSG00000145736
GO:0006810
IEA
PLAZA Integrative Orthologytransport ENSG00000145736
GO:0044093
IEA
PLAZA Integrative Orthologypositive regulation of molecular function ENSG00000145736
GO:0051179
IEA
PLAZA Integrative Orthologylocalization ENSG00000145736
GO:0010468
IEA
PLAZA Integrative Orthologyregulation of gene expression AT1G05055
GO:0016043
IEA
PLAZA Integrative Orthologycellular component organization ENSG00000145736
GO:0071840
IEA
PLAZA Integrative Orthologycellular component organization or biogenesis ENSG00000145736
GO:0070911
IEA
PLAZA Integrative Orthologyglobal genome nucleotide-excision repair ENSG00000145736
GO:0051336
IEA
PLAZA Integrative Orthologyregulation of hydrolase activity ENSG00000145736
GO:0019538
IEA
PLAZA Integrative Orthologyprotein metabolic process YLR005W
GO:0033683
IEA
PLAZA Integrative Orthologynucleotide-excision repair, DNA incision ENSG00000145736
GO:0009452
IEA
PLAZA Integrative Orthology7-methylguanosine RNA capping ENSG00000145736
GO:0007154
IEA
PLAZA Integrative Orthologycell communication ENSG00000145736
GO:0033044
IEA
PLAZA Integrative Orthologyregulation of chromosome organization ENSG00000145736
GO:0033043
IEA
PLAZA Integrative Orthologyregulation of organelle organization ENSG00000145736
GO:0006464
IEA
PLAZA Integrative Orthologycellular protein modification process YLR005W
GO:1901564
IEA
PLAZA Integrative Orthologyorganonitrogen compound metabolic process YLR005W
GO:1903506
IEA
PLAZA Integrative Orthologyregulation of nucleic acid-templated transcription AT1G05055
GO:0006468
IEA
PLAZA Integrative Orthologyprotein phosphorylation YLR005W
GO:0045744
IEA
PLAZA Integrative Orthologynegative regulation of G protein-coupled receptor signaling pathway ENSG00000145736
GO:0051345
IEA
PLAZA Integrative Orthologypositive regulation of hydrolase activity ENSG00000145736
GO:0048583
IEA
PLAZA Integrative Orthologyregulation of response to stimulus ENSG00000145736
GO:0009968
IEA
PLAZA Integrative Orthologynegative regulation of signal transduction ENSG00000145736
GO:0032508
IEA
PLAZA Integrative OrthologyDNA duplex unwinding ENSG00000145736
GO:0048585
IEA
PLAZA Integrative Orthologynegative regulation of response to stimulus ENSG00000145736
GO:0010556
IEA
PLAZA Integrative Orthologyregulation of macromolecule biosynthetic process AT1G05055
GO:0016310
IEA
PLAZA Integrative Orthologyphosphorylation YLR005W
GO:0070816
IEA
PLAZA Integrative Orthologyphosphorylation of RNA polymerase II C-terminal domain YLR005W
GO:1905776
IEA
PLAZA Integrative Orthologypositive regulation of DNA helicase activity ENSG00000145736
GO:0007165
IEA
PLAZA Integrative Orthologysignal transduction ENSG00000145736
GO:1905774
IEA
PLAZA Integrative Orthologyregulation of DNA helicase activity ENSG00000145736
GO:0044267
IEA
PLAZA Integrative Orthologycellular protein metabolic process YLR005W
GO:0006354
IEA
PLAZA Integrative OrthologyDNA-templated transcription, elongation ENSG00000145736
GO:0006355
IEA
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G05055
GO:0006352
IEA
PLAZA Integrative OrthologyDNA-templated transcription, initiation SPCC1682.07
GO:0002031
IEA
PLAZA Integrative OrthologyG protein-coupled receptor internalization ENSG00000145736
GO:0036260
IEA
PLAZA Integrative OrthologyRNA capping ENSG00000145736
GO:0006353
IEA
PLAZA Integrative OrthologyDNA-templated transcription, termination ENSG00000145736
GO:0006996
IEA
PLAZA Integrative Orthologyorganelle organization ENSG00000145736
GO:0006357
IEA
PLAZA Integrative Orthologyregulation of transcription by RNA polymerase II AT1G05055
GO:0002029
IEA
PLAZA Integrative Orthologydesensitization of G protein-coupled receptor signaling pathway ENSG00000145736
GO:0051234
IEA
PLAZA Integrative Orthologyestablishment of localization ENSG00000145736
GO:0071103
IEA
PLAZA Integrative OrthologyDNA conformation change ENSG00000145736
GO:0050789
IEA
PLAZA Integrative Orthologyregulation of biological process AT1G05055

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
InterPrometal ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0016887
IEA
PLAZA Integrative OrthologyATPase activity ENSG00000145736
GO:0003723
IEA
PLAZA Integrative OrthologyRNA binding ENSG00000145736
GO:0016251
IEA
PLAZA Integrative OrthologyRNA polymerase II general transcription initiation factor activity SPCC1682.07
GO:0016772
IEA
PLAZA Integrative Orthologytransferase activity, transferring phosphorus-containing groups ENSG00000145736
GO:0016773
IEA
PLAZA Integrative Orthologyphosphotransferase activity, alcohol group as acceptor ENSG00000145736
GO:0140110
IEA
PLAZA Integrative Orthologytranscription regulator activity SPCC1682.07
GO:0008353
IEA
PLAZA Integrative OrthologyRNA polymerase II CTD heptapeptide repeat kinase activity ENSG00000145736
GO:0004672
IEA
PLAZA Integrative Orthologyprotein kinase activity ENSG00000145736
GO:0004674
IEA
PLAZA Integrative Orthologyprotein serine/threonine kinase activity ENSG00000145736
GO:0005515
IEA
PLAZA Integrative Orthologyprotein binding ENSG00000145736
GO:0140223
IEA
PLAZA Integrative Orthologygeneral transcription initiation factor activity SPCC1682.07
GO:0061630
IEA
PLAZA Integrative Orthologyubiquitin protein ligase activity YLR005W
GO:1901363
IEA
PLAZA Integrative Orthologyheterocyclic compound binding ENSG00000145736
GO:0003824
IEA
PLAZA Integrative Orthologycatalytic activity YLR005W
GO:0140096
IEA
PLAZA Integrative Orthologycatalytic activity, acting on a protein YLR005W
GO:0003676
IEA
PLAZA Integrative Orthologynucleic acid binding ENSG00000145736
GO:0016462
IEA
PLAZA Integrative Orthologypyrophosphatase activity ENSG00000145736
GO:0016740
IEA
PLAZA Integrative Orthologytransferase activity YLR005W
GO:0061659
IEA
PLAZA Integrative Orthologyubiquitin-like protein ligase activity YLR005W
GO:0042623
IEA
PLAZA Integrative OrthologyATPase activity, coupled ENSG00000145736
GO:0047485
IEA
PLAZA Integrative Orthologyprotein N-terminus binding ENSG00000145736
GO:0019787
IEA
PLAZA Integrative Orthologyubiquitin-like protein transferase activity YLR005W
GO:0008094
IEA
PLAZA Integrative OrthologyDNA-dependent ATPase activity ENSG00000145736
GO:0016817
IEA
PLAZA Integrative Orthologyhydrolase activity, acting on acid anhydrides ENSG00000145736
GO:0016818
IEA
PLAZA Integrative Orthologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides ENSG00000145736
GO:0008135
IEA
PLAZA Integrative Orthologytranslation factor activity, RNA binding ENSG00000145736
GO:0004842
IEA
PLAZA Integrative Orthologyubiquitin-protein transferase activity YLR005W
GO:0097159
IEA
PLAZA Integrative Orthologyorganic cyclic compound binding ENSG00000145736
GO:0017111
IEA
PLAZA Integrative Orthologynucleoside-triphosphatase activity ENSG00000145736
GO:0016301
IEA
PLAZA Integrative Orthologykinase activity ENSG00000145736
GO:0016787
IEA
PLAZA Integrative Orthologyhydrolase activity ENSG00000145736

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0061695
IEA
PLAZA Integrative Orthologytransferase complex, transferring phosphorus-containing groups SPCC1682.07
GO:1902554
IEA
PLAZA Integrative Orthologyserine/threonine protein kinase complex SPCC1682.07
GO:0000109
IEA
PLAZA Integrative Orthologynucleotide-excision repair complex YLR005W
GO:0043233
IEA
PLAZA Integrative Orthologyorganelle lumen SPCC1682.07
GO:0044444
IEA
PLAZA Integrative Orthologycytoplasmic part SPCC1682.07
GO:0044451
IEA
PLAZA Integrative Orthologynucleoplasm part SPCC1682.07
GO:0031981
IEA
PLAZA Integrative Orthologynuclear lumen SPCC1682.07
GO:0000438
IEA
PLAZA Integrative Orthologycore TFIIH complex portion of holo TFIIH complex ENSG00000145736
GO:1990391
IEA
PLAZA Integrative OrthologyDNA repair complex YLR005W
GO:0016591
IEA
PLAZA Integrative OrthologyRNA polymerase II, holoenzyme SPCC1682.07
GO:0030880
IEA
PLAZA Integrative OrthologyRNA polymerase complex SPCC1682.07
GO:0031974
IEA
PLAZA Integrative Orthologymembrane-enclosed lumen SPCC1682.07
GO:0005737
IEA
PLAZA Integrative Orthologycytoplasm SPCC1682.07
GO:0016604
IEA
PLAZA Integrative Orthologynuclear body ENSG00000145736
GO:0016607
IEA
PLAZA Integrative Orthologynuclear speck ENSG00000145736
GO:0005675
IEA
PLAZA Integrative Orthologytranscription factor TFIIH holo complex SPCC1682.07
GO:1902911
IEA
PLAZA Integrative Orthologyprotein kinase complex SPCC1682.07
GO:0005669
IEA
PLAZA Integrative Orthologytranscription factor TFIID complex ENSG00000145736
GO:0032806
IEA
PLAZA Integrative Orthologycarboxy-terminal domain protein kinase complex SPCC1682.07
GO:0005829
IEA
PLAZA Integrative Orthologycytosol SPCC1682.07
GO:0000428
IEA
PLAZA Integrative OrthologyDNA-directed RNA polymerase complex SPCC1682.07
GO:1902494
IEA
PLAZA Integrative Orthologycatalytic complex SPCC1682.07
GO:0005654
IEA
PLAZA Integrative Orthologynucleoplasm SPCC1682.07
GO:0000112
IEA
PLAZA Integrative Orthologynucleotide-excision repair factor 3 complex YLR005W
GO:0055029
IEA
PLAZA Integrative Orthologynuclear DNA-directed RNA polymerase complex SPCC1682.07
GO:1990234
IEA
PLAZA Integrative Orthologytransferase complex SPCC1682.07
GO:0070013
IEA
PLAZA Integrative Orthologyintracellular organelle lumen SPCC1682.07

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012170TFIIH subunit Ssl1/p44
IPR007198Ssl1-like
IPR004595TFIIH C1-like domain
IPR002035von Willebrand factor, type A

No MapMan annotations defined for this gene.
KeggID Description
K03142TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2
No chloroplast target sequence found.