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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Family
ORTHO02SEM000099
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
AA0001G00180
Aureococcus anophagefferens
AA0001G02770
Aureococcus anophagefferens
AA0001G05530
Aureococcus anophagefferens
AA0002G02760
Aureococcus anophagefferens
AA0002G03030
Aureococcus anophagefferens
AA0003G01610
Aureococcus anophagefferens
AA0003G02650
Aureococcus anophagefferens
AA0003G05210
Aureococcus anophagefferens
AA0004G00410
Aureococcus anophagefferens
AA0004G01090
Aureococcus anophagefferens
AA0004G04030
Aureococcus anophagefferens
AA0005G04720
Aureococcus anophagefferens
AA0006G05550
Aureococcus anophagefferens
AA0009G02980
Aureococcus anophagefferens
AA0009G03190
Aureococcus anophagefferens
AA0011G01000
Aureococcus anophagefferens
AA0012G01380
Aureococcus anophagefferens
AA0013G01170
Aureococcus anophagefferens
AA0016G01630
Aureococcus anophagefferens
AA0031G00140
Aureococcus anophagefferens
AA0034G00500
Aureococcus anophagefferens
AA0063G00100
Aureococcus anophagefferens
AA0246G00020
Aureococcus anophagefferens
AA0698G00010
Aureococcus anophagefferens
AT1G06260
Arabidopsis thaliana
AT1G09850
Arabidopsis thaliana
AT1G20850
Arabidopsis thaliana
AT1G29080
Arabidopsis thaliana
AT1G29090
Arabidopsis thaliana
AT1G29110
Arabidopsis thaliana
AT1G47128
Arabidopsis thaliana
AT2G21430
Arabidopsis thaliana
AT2G27420
Arabidopsis thaliana
AT2G34080
Arabidopsis thaliana
AT3G19390
Arabidopsis thaliana
AT3G19400
Arabidopsis thaliana
AT3G43960
Arabidopsis thaliana
AT3G45310
Arabidopsis thaliana
AT3G48340
Arabidopsis thaliana
AT3G48350
Arabidopsis thaliana
AT3G49340
Arabidopsis thaliana
AT3G54940
Arabidopsis thaliana
AT4G11310
Arabidopsis thaliana
AT4G11320
Arabidopsis thaliana
AT4G16190
Arabidopsis thaliana
AT4G23520
Arabidopsis thaliana
AT4G35350
Arabidopsis thaliana
AT4G36880
Arabidopsis thaliana
AT4G39090
Arabidopsis thaliana
AT5G43060
Arabidopsis thaliana
AT5G45890
Arabidopsis thaliana
AT5G50260
Arabidopsis thaliana
AT5G60360
Arabidopsis thaliana
CC00G181920
Cyclotella cryptica
CC00G191610
Cyclotella cryptica
CC00G195600
Cyclotella cryptica
CC00G203270
Cyclotella cryptica
CC00G37610
Cyclotella cryptica
CC00G37620
Cyclotella cryptica
Cre01.g010832
Chlamydomonas reinhardtii
Cre05.g247851
Chlamydomonas reinhardtii
Cre07.g333000
Chlamydomonas reinhardtii
Cre08.g358522
Chlamydomonas reinhardtii
Cre08.g381050
Chlamydomonas reinhardtii
Cre09.g407700
Chlamydomonas reinhardtii
ENSG00000103811
Homo sapiens
ENSG00000135047
Homo sapiens
ENSG00000136943
Homo sapiens
ENSG00000143387
Homo sapiens
ENSG00000163131
Homo sapiens
ENSG00000172543
Homo sapiens
ENSG00000174080
Homo sapiens
ENSG00000256043
Homo sapiens
ENSG00000263238
Homo sapiens
Ec-00_008060
Ectocarpus siliculosus
Ec-01_006960
Ectocarpus siliculosus
Ec-14_001100
Ectocarpus siliculosus
Ec-27_000190
Ectocarpus siliculosus
FBgn0013770
Drosophila melanogaster
FBgn0032228
Drosophila melanogaster
FBgn0033874
Drosophila melanogaster
FBgn0034229
Drosophila melanogaster
FBgn0037396
Drosophila melanogaster
FBgn0250848
Drosophila melanogaster
FBgn0260462
Drosophila melanogaster
Naga_100005g81
Nannochloropsis gaditana
Naga_100039g23
Nannochloropsis gaditana
Naga_100049g37
Nannochloropsis gaditana
Naga_100270g8
Nannochloropsis gaditana
Naga_100288g3
Nannochloropsis gaditana
PSNMU-V1.4_AUG-EV-PASAV3_0002330
Pseudo-nitzschia multistriata
PSNMU-V1.4_AUG-EV-PASAV3_0006100
Pseudo-nitzschia multistriata
PSNMU-V1.4_AUG-EV-PASAV3_0037440
Pseudo-nitzschia multistriata
PSNMU-V1.4_AUG-EV-PASAV3_0081140
Pseudo-nitzschia multistriata
PSNMU-V1.4_AUG-EV-PASAV3_0092520
Pseudo-nitzschia multistriata
Pp3c13_8810
Physcomitrella patens
Pp3c18_11500
Physcomitrella patens
Pp3c19_6730
Physcomitrella patens
Pp3c21_12340
Physcomitrella patens
Pp3c23_20820
Physcomitrella patens
Pp3c3_17920
Physcomitrella patens
Pp3c8_20370
Physcomitrella patens
Pp3c9_5330
Physcomitrella patens
Sro1847_g301410
Seminavis robusta
Sro453_g146200
Seminavis robusta
Sro541_g163220
Seminavis robusta
Sro72_g039650
Seminavis robusta
Sro971_g226500
Seminavis robusta
WBGene00000776
Caenorhabditis elegans
WBGene00007055
Caenorhabditis elegans
WBGene00008231
Caenorhabditis elegans
WBGene00011102
Caenorhabditis elegans
WBGene00012747
Caenorhabditis elegans
WBGene00013076
Caenorhabditis elegans
WBGene00019314
Caenorhabditis elegans
WBGene00019986
Caenorhabditis elegans
WBGene00022189
Caenorhabditis elegans
WBGene00044760
Caenorhabditis elegans
emh01020
Emiliania huxleyi
emh150880
Emiliania huxleyi
emh230300
Emiliania huxleyi
emh39500
Emiliania huxleyi
emh517250
Emiliania huxleyi
emh528080
Emiliania huxleyi
emh739650
Emiliania huxleyi
emh740250
Emiliania huxleyi
emh742860
Emiliania huxleyi
fso167360
Fistulifera solaris
fso16990
Fistulifera solaris
fso172790
Fistulifera solaris
fso186330
Fistulifera solaris
fso189610
Fistulifera solaris
fso34210
Fistulifera solaris
fso60850
Fistulifera solaris
gene11771
Fragilariopsis cylindrus
gene13220
Fragilariopsis cylindrus
gene17832
Fragilariopsis cylindrus
gene21010
Fragilariopsis cylindrus
gene6062
Fragilariopsis cylindrus
gene930
Fragilariopsis cylindrus
ps00G160050
Pseudo-nitzschia multiseries
ps00G163960
Pseudo-nitzschia multiseries
ps00G189280
Pseudo-nitzschia multiseries
ps00G28360
Pseudo-nitzschia multiseries
ps00G66790
Pseudo-nitzschia multiseries
ps00G77660
Pseudo-nitzschia multiseries
pte05070
Paramecium tetraurelia
pte181520
Paramecium tetraurelia
pte194130
Paramecium tetraurelia
pte206600
Paramecium tetraurelia
pte244020
Paramecium tetraurelia
pte245080
Paramecium tetraurelia
pte250650
Paramecium tetraurelia
pte253010
Paramecium tetraurelia
pte27270
Paramecium tetraurelia
pte28890
Paramecium tetraurelia
pte29030
Paramecium tetraurelia
pte295130
Paramecium tetraurelia
pte325710
Paramecium tetraurelia
pte336020
Paramecium tetraurelia
pte342630
Paramecium tetraurelia
pte355330
Paramecium tetraurelia
pte372850
Paramecium tetraurelia
pte426550
Paramecium tetraurelia
pte440160
Paramecium tetraurelia
pte440180
Paramecium tetraurelia
pte478820
Paramecium tetraurelia
pte480340
Paramecium tetraurelia
pte48070
Paramecium tetraurelia
pte485030
Paramecium tetraurelia
pte517540
Paramecium tetraurelia
pte535550
Paramecium tetraurelia
pte592060
Paramecium tetraurelia
pte598100
Paramecium tetraurelia
pte614920
Paramecium tetraurelia
pte619100
Paramecium tetraurelia
pte622380
Paramecium tetraurelia
pte624630
Paramecium tetraurelia
pte626450
Paramecium tetraurelia
pte688570
Paramecium tetraurelia
pte711280
Paramecium tetraurelia
pte723280
Paramecium tetraurelia
pte74260
Paramecium tetraurelia
pte761220
Paramecium tetraurelia
pte779000
Paramecium tetraurelia
pte782440
Paramecium tetraurelia
ptri11580
Phaeodactylum tricornutum
ptri135860
Phaeodactylum tricornutum
ptri207780
Phaeodactylum tricornutum
sya00G04120
Synedra acus
sya00G162510
Synedra acus
sya00G203140
Synedra acus
sya00G262980
Synedra acus
tho09500
Thalassiosira oceanica
tho565700
Thalassiosira oceanica
tho628500
Thalassiosira oceanica
tho81160
Thalassiosira oceanica
tps107860
Thalassiosira pseudonana
tps108160
Thalassiosira pseudonana
tps196790
Thalassiosira pseudonana
tps213650
Thalassiosira pseudonana
tps224940
Thalassiosira pseudonana
tps40840
Thalassiosira pseudonana
tps79140
Thalassiosira pseudonana
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (7 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (6 genes)
Fistulifera solaris (7 genes)
Fragilariopsis cylindrus (6 genes)
Cyclotella cryptica (6 genes)
Aureococcus anophagefferens (24 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (5 genes)
Homo sapiens (9 genes)
Drosophila melanogaster (7 genes)
Caenorhabditis elegans (10 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (29 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (9 genes)
Paramecium tetraurelia (40 genes)
Seminavis robusta (5 genes)
Synedra acus (4 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (6 genes)
Pseudo-nitzschia multistriata (5 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
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