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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
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All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Family
HOM02SEM000172
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
CC00G64800
Cyclotella cryptica
Sro385_g131620
Seminavis robusta
Sro807_g205280
Seminavis robusta
Sro1900_g304230
Seminavis robusta
Sro82_g043810
Seminavis robusta
Sro1210_g252710
Seminavis robusta
Sro1904_g304560
Seminavis robusta
Sro1698_g291940
Seminavis robusta
Sro151_g069030
Seminavis robusta
ps00G179240
Pseudo-nitzschia multiseries
Sro817_g206910
Seminavis robusta
Sro233_g094240
Seminavis robusta
Sro7_g005771
Seminavis robusta
ps00G18060
Pseudo-nitzschia multiseries
Sro2827_g338041
Seminavis robusta
CC00G77800
Cyclotella cryptica
sya00G75580
Synedra acus
sya00G144000
Synedra acus
sya00G00180
Synedra acus
Sro442_g143780
Seminavis robusta
CC00G34720
Cyclotella cryptica
ps00G108870
Pseudo-nitzschia multiseries
Sro2027_g311740
Seminavis robusta
Sro632_g178610
Seminavis robusta
ps00G90480
Pseudo-nitzschia multiseries
Sro1698_g291960
Seminavis robusta
sya00G128060
Synedra acus
sya00G262690
Synedra acus
Sro1191_g250950
Seminavis robusta
CC00G151610
Cyclotella cryptica
Sro1951_g307410
Seminavis robusta
Sro17_g012430
Seminavis robusta
Sro1351_g265280
Seminavis robusta
Sro2462_g328330
Seminavis robusta
Sro3152_g344510
Seminavis robusta
Sro2622_g332880
Seminavis robusta
Sro149_g068550
Seminavis robusta
sya00G75570
Synedra acus
tho450160
Thalassiosira oceanica
sya00G75590
Synedra acus
CC00G194660
Cyclotella cryptica
sya00G232980
Synedra acus
Sro1727_g293940
Seminavis robusta
Sro1607_g285550
Seminavis robusta
Sro1079_g238900
Seminavis robusta
sya00G217880
Synedra acus
ps00G186110
Pseudo-nitzschia multiseries
Sro996_g229220
Seminavis robusta
ps00G62210
Pseudo-nitzschia multiseries
sya00G14300
Synedra acus
ps00G61210
Pseudo-nitzschia multiseries
Sro807_g205290
Seminavis robusta
ps00G60960
Pseudo-nitzschia multiseries
Sro1376_g267480
Seminavis robusta
CC00G49410
Cyclotella cryptica
Sro525_g160170
Seminavis robusta
Sro722_g192800
Seminavis robusta
sya00G128050
Synedra acus
Sro591_g171970
Seminavis robusta
Sro1620_g286500
Seminavis robusta
Sro2206_g319030
Seminavis robusta
CC00G137290
Cyclotella cryptica
Sro1955_g307690
Seminavis robusta
Sro632_g178620
Seminavis robusta
Sro498_g154970
Seminavis robusta
ps00G69330
Pseudo-nitzschia multiseries
Sro1376_g267470
Seminavis robusta
ps00G159190
Pseudo-nitzschia multiseries
Sro2222_g319660
Seminavis robusta
Sro1362_g266250
Seminavis robusta
Sro227_g092310
Seminavis robusta
Sro42_g025520
Seminavis robusta
Sro1077_g238560
Seminavis robusta
Sro166_g074151
Seminavis robusta
Sro507_g156580
Seminavis robusta
Sro42_g025650
Seminavis robusta
Sro4050_g352670
Seminavis robusta
gene19388
Fragilariopsis cylindrus
Sro233_g094230
Seminavis robusta
sya00G232990
Synedra acus
gene4690
Fragilariopsis cylindrus
gene19507
Fragilariopsis cylindrus
Sro2592_g332070
Seminavis robusta
sya00G221200
Synedra acus
Sro149_g068560
Seminavis robusta
sya00G112130
Synedra acus
Sro591_g171960
Seminavis robusta
sya00G180000
Synedra acus
Sro3060_g342950
Seminavis robusta
Sro12_g009360
Seminavis robusta
Sro1210_g252730
Seminavis robusta
CC00G152560
Cyclotella cryptica
CC00G70590
Cyclotella cryptica
Sro1077_g238550
Seminavis robusta
sya00G210770
Synedra acus
CC00G165850
Cyclotella cryptica
Sro2303_g322540
Seminavis robusta
CC00G126410
Cyclotella cryptica
gene8953
Fragilariopsis cylindrus
Sro1019_g231930
Seminavis robusta
ps00G69350
Pseudo-nitzschia multiseries
Sro436_g142710
Seminavis robusta
CC00G06520
Cyclotella cryptica
sya00G227830
Synedra acus
gene448
Fragilariopsis cylindrus
Sro292_g109591
Seminavis robusta
Sro744_g196200
Seminavis robusta
gene18460
Fragilariopsis cylindrus
Sro196_g083700
Seminavis robusta
Sro2218_g319500
Seminavis robusta
ps00G118070
Pseudo-nitzschia multiseries
CC00G145110
Cyclotella cryptica
Sro703_g190140
Seminavis robusta
CC00G64410
Cyclotella cryptica
Sro722_g192810
Seminavis robusta
Sro1727_g293950
Seminavis robusta
ps00G47060
Pseudo-nitzschia multiseries
Sro63_g035820
Seminavis robusta
Sro217_g089880
Seminavis robusta
sya00G14290
Synedra acus
sya00G36840
Synedra acus
sya00G161310
Synedra acus
ps00G09660
Pseudo-nitzschia multiseries
Sro1812_g299270
Seminavis robusta
Sro180_g078700
Seminavis robusta
sya00G112140
Synedra acus
sya00G196570
Synedra acus
ps00G26730
Pseudo-nitzschia multiseries
Sro1210_g252720
Seminavis robusta
Sro1406_g269940
Seminavis robusta
Sro3079_g343350
Seminavis robusta
Sro1870_g302680
Seminavis robusta
gene17491
Fragilariopsis cylindrus
Sro448_g145131
Seminavis robusta
Sro1200_g251930
Seminavis robusta
Sro2303_g322560
Seminavis robusta
ps00G69340
Pseudo-nitzschia multiseries
Sro564_g167470
Seminavis robusta
Sro2592_g332060
Seminavis robusta
ps00G127730
Pseudo-nitzschia multiseries
Sro2263_g321220
Seminavis robusta
sya00G20960
Synedra acus
sya00G128030
Synedra acus
sya00G256100
Synedra acus
Sro2428_g327370
Seminavis robusta
ps00G75040
Pseudo-nitzschia multiseries
Sro1434_g272330
Seminavis robusta
Sro3160_g344630
Seminavis robusta
Sro4503_g354160
Seminavis robusta
ps00G149490
Pseudo-nitzschia multiseries
Sro1079_g238930
Seminavis robusta
ps00G162080
Pseudo-nitzschia multiseries
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (20 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (7 genes)
Cyclotella cryptica (14 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (85 genes)
Synedra acus (25 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing