Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps27790
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps27790
Thalassiosira pseudonana
0.0e+00
1225.7
628
100.0
CC00G72160
Cyclotella cryptica
1.1e-193
678.3
509
72.3
Sro6_g005140
Seminavis robusta
1.6e-96
355.5
469
45.2
ps00G146670
Pseudo-nitzschia multiseries
7.1e-89
330.1
462
43.5
gene4449
Fragilariopsis cylindrus
6.0e-88
327.0
487
41.3
ptri26120
Phaeodactylum tricornutum
2.1e-80
302.0
483
40.8
fso117030
Fistulifera solaris
6.0e-80
300.4
484
39.7
fso72960
Fistulifera solaris
1.1e-78
296.2
515
38.6
gene16176
Fragilariopsis cylindrus
2.5e-78
295.0
453
40.2
sya00G39610
Synedra acus
3.4e-75
284.6
455
39.3
PSNMU-V1.4_AUG-EV-PASAV3_0044820
Pseudo-nitzschia multistriata
5.7e-70
267.3
428
40.7
Naga_100011g51
Nannochloropsis gaditana
9.4e-49
196.8
502
33.3
Cre04.g217922
Chlamydomonas reinhardtii
4.0e-39
164.9
458
29.9
Pp3c16_2890
Physcomitrella patens
3.7e-37
158.3
459
30.1
AA0054G00050
Aureococcus anophagefferens
1.8e-36
156.0
421
31.6
ccr128240
Chondrus crispus
6.5e-34
147.5
456
28.5
AT1G65040
Arabidopsis thaliana
1.0e-31
140.2
457
26.5
AT3G16090
Arabidopsis thaliana
3.0e-31
138.7
501
26.1
ENSG00000162298
Homo sapiens
3.1e-28
128.6
455
27.5
CM07G01900
Cyanidioschyzon merolae
1.5e-25
119.8
457
25.4
FBgn0039875
Drosophila melanogaster
4.2e-25
118.2
463
25.7
WBGene00004768
Caenorhabditis elegans
1.2e-22
110.2
451
25.3
gsu122750
Galdieria sulphuraria
4.1e-20
101.7
487
24.4
gsu122730
Galdieria sulphuraria
2.8e-16
89.0
442
24.4
SPBC17D11.02c
Schizosaccharomyces pombe
2.3e-15
85.9
155
33.5
emh103250
Emiliania huxleyi
1.3e-13
80.1
249
26.9
Ec-28_002940
Ectocarpus siliculosus
1.3e-13
80.1
121
38.0
CC00G177970
Cyclotella cryptica
4.1e-12
75.1
77
57.1
ENSG00000159461
Homo sapiens
1.2e-11
73.6
115
39.1
emh327260
Emiliania huxleyi
2.7e-11
72.4
414
22.2
sya00G33980
Synedra acus
2.7e-11
72.4
76
52.6
emh266500
Emiliania huxleyi
4.6e-11
71.6
82
46.3
pte729470
Paramecium tetraurelia
8.1e-08
60.8
94
34.0
pte575230
Paramecium tetraurelia
1.4e-07
60.1
140
26.4
AT2G18670
Arabidopsis thaliana
1.8e-07
59.7
46
45.7
gene20067
Fragilariopsis cylindrus
4.0e-07
58.5
104
33.7
AT4G30370
Arabidopsis thaliana
6.8e-07
57.8
57
40.4
WBGene00009164
Caenorhabditis elegans
1.2e-06
57.0
88
30.7
WBGene00013651
Caenorhabditis elegans
1.2e-06
57.0
42
47.6
Cre13.g580750
Chlamydomonas reinhardtii
1.2e-06
57.0
79
39.2
CC00G103460
Cyclotella cryptica
2.0e-06
56.2
76
35.5
AT3G10815
Arabidopsis thaliana
2.6e-06
55.8
100
30.0
AT3G20395
Arabidopsis thaliana
4.4e-06
55.1
50
42.0
AT1G14200
Arabidopsis thaliana
5.8e-06
54.7
66
33.3
PSNMU-V1.4_AUG-EV-PASAV3_0056150
Pseudo-nitzschia multistriata
5.8e-06
54.7
84
36.9
AT3G60220
Arabidopsis thaliana
7.5e-06
54.3
57
40.4
ps00G104930
Pseudo-nitzschia multiseries
7.5e-06
54.3
50
40.0
AT3G48030
Arabidopsis thaliana
9.8e-06
53.9
49
36.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (3 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (9 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (1 genes)
Synedra acus (2 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing