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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps185380
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps185380
Thalassiosira pseudonana
2.1e-261
902.5
445
100.0
CC00G189380
Cyclotella cryptica
1.6e-173
610.5
515
63.3
tho263180
Thalassiosira oceanica
5.8e-155
548.9
505
57.4
sya00G141530
Synedra acus
5.0e-90
333.2
445
43.6
gene10837
Fragilariopsis cylindrus
5.2e-87
323.2
442
43.0
ps00G95850
Pseudo-nitzschia multiseries
4.1e-84
313.5
430
42.8
PSNMU-V1.4_AUG-EV-PASAV3_0119790
Pseudo-nitzschia multistriata
2.5e-81
304.3
463
40.8
ptri57820
Phaeodactylum tricornutum
1.0e-79
298.9
458
39.3
fso103720
Fistulifera solaris
1.2e-72
275.4
447
40.5
fso04660
Fistulifera solaris
4.0e-71
270.4
446
40.8
Naga_100035g28
Nannochloropsis gaditana
2.2e-69
264.6
450
39.8
Sro184_g079890
Seminavis robusta
2.7e-67
257.7
460
38.7
Ec-03_004420
Ectocarpus siliculosus
2.6e-62
241.1
516
34.1
ENSG00000119523
Homo sapiens
7.1e-60
233.0
437
36.8
pte443810
Paramecium tetraurelia
1.1e-57
225.7
378
37.8
AT1G78800
Arabidopsis thaliana
3.6e-56
220.7
421
34.9
FBgn0035401
Drosophila melanogaster
2.4e-55
218.0
427
35.6
AA0018G01130
Aureococcus anophagefferens
6.8e-55
216.5
427
35.1
Pp3c12_4340
Physcomitrella patens
1.2e-54
215.7
436
33.9
WBGene00017282
Caenorhabditis elegans
6.4e-53
209.9
429
32.6
ccr138580
Chondrus crispus
3.5e-51
204.1
435
35.9
SPBC11B10.01
Schizosaccharomyces pombe
1.0e-50
202.6
438
32.0
Cre02.g095147
Chlamydomonas reinhardtii
9.6e-49
196.1
411
35.8
gsu17350
Galdieria sulphuraria
6.2e-48
193.4
385
37.1
YGL065C
Saccharomyces cerevisiae strain S288C
4.0e-47
190.7
459
32.5
CM20G01680
Cyanidioschyzon merolae
2.2e-45
184.9
474
32.1
WBGene00044623
Caenorhabditis elegans
2.1e-24
115.2
325
29.5
CC00G31780
Cyclotella cryptica
2.7e-11
71.6
264
27.7
ENSG00000253710
Homo sapiens
6.1e-11
70.5
233
30.0
sya00G78940
Synedra acus
1.9e-09
65.5
273
26.0
AA0005G01180
Aureococcus anophagefferens
2.5e-09
65.1
243
28.0
Sro98_g050430
Seminavis robusta
1.7e-08
62.4
256
26.2
PSNMU-V1.4_AUG-EV-PASAV3_0092700
Pseudo-nitzschia multistriata
3.7e-08
61.2
133
33.1
FBgn0037108
Drosophila melanogaster
6.3e-08
60.5
259
26.6
Ec-04_002960
Ectocarpus siliculosus
1.1e-07
59.7
249
27.7
tho40400
Thalassiosira oceanica
1.4e-07
59.3
258
26.0
gsu48660
Galdieria sulphuraria
4.1e-07
57.8
129
32.6
ps00G138170
Pseudo-nitzschia multiseries
4.1e-07
57.8
99
32.3
ptri107000
Phaeodactylum tricornutum
5.3e-07
57.4
197
26.4
tps30870
Thalassiosira pseudonana
6.9e-07
57.0
199
27.6
CM18G03460
Cyanidioschyzon merolae
9.1e-07
56.6
92
31.5
fso38300
Fistulifera solaris
1.2e-06
56.2
137
29.9
ccr168000
Chondrus crispus
1.5e-06
55.8
121
28.9
fso17820
Fistulifera solaris
4.5e-06
54.3
125
31.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (2 genes)
Synedra acus (2 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
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