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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps144100
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps144100
Thalassiosira pseudonana
7.8e-256
884.0
455
100.0
CC00G96200
Cyclotella cryptica
1.3e-85
318.5
366
51.6
tho421300
Thalassiosira oceanica
3.6e-27
124.4
235
31.5
ptri21090
Phaeodactylum tricornutum
5.2e-26
120.6
275
28.4
Sro458_g147090
Seminavis robusta
3.2e-23
111.3
191
34.6
ptri211550
Phaeodactylum tricornutum
7.1e-23
110.2
217
32.3
Sro245_g097390
Seminavis robusta
2.7e-22
108.2
227
29.5
ptri228830
Phaeodactylum tricornutum
3.5e-22
107.8
221
29.4
Sro1512_g278790
Seminavis robusta
3.5e-22
107.8
219
30.6
gene6405
Fragilariopsis cylindrus
4.6e-22
107.5
217
32.3
sya00G242400
Synedra acus
6.0e-22
107.1
321
25.9
ps00G192350
Pseudo-nitzschia multiseries
2.3e-21
105.1
255
28.2
PSNMU-V1.4_AUG-EV-PASAV3_0030110
Pseudo-nitzschia multistriata
3.0e-21
104.8
217
30.4
tps97340
Thalassiosira pseudonana
8.6e-21
103.2
126
42.1
ps00G01920
Pseudo-nitzschia multiseries
1.5e-20
102.4
217
29.5
fso08560
Fistulifera solaris
4.3e-20
100.9
279
26.9
fso89100
Fistulifera solaris
4.3e-20
100.9
258
27.1
Sro748_g196620
Seminavis robusta
9.5e-20
99.8
217
29.0
fso11540
Fistulifera solaris
1.2e-19
99.4
228
29.4
sya00G242440
Synedra acus
1.2e-19
99.4
178
33.7
fso39760
Fistulifera solaris
1.6e-19
99.0
226
28.3
fso113910
Fistulifera solaris
1.6e-19
99.0
228
29.4
CC00G13180
Cyclotella cryptica
2.1e-19
98.6
224
29.5
fso98040
Fistulifera solaris
2.1e-19
98.6
125
38.4
fso143640
Fistulifera solaris
2.1e-19
98.6
271
27.3
fso15630
Fistulifera solaris
2.8e-19
98.2
271
28.0
tps126430
Thalassiosira pseudonana
4.7e-19
97.4
219
28.3
CC00G57010
Cyclotella cryptica
6.2e-19
97.1
130
39.2
sya00G53380
Synedra acus
6.2e-19
97.1
217
30.4
fso109690
Fistulifera solaris
1.1e-18
96.3
226
27.9
PSNMU-V1.4_AUG-EV-PASAV3_0081540
Pseudo-nitzschia multistriata
1.1e-18
96.3
157
34.4
fso62790
Fistulifera solaris
1.4e-18
95.9
125
36.8
tps71590
Thalassiosira pseudonana
1.4e-18
95.9
128
39.8
Sro299_g111270
Seminavis robusta
1.8e-18
95.5
166
33.7
Sro560_g166640
Seminavis robusta
3.1e-18
94.7
254
29.1
tps64720
Thalassiosira pseudonana
3.1e-18
94.7
262
27.1
Sro3210_g345280
Seminavis robusta
5.2e-18
94.0
166
33.7
CC00G47830
Cyclotella cryptica
6.8e-18
93.6
128
36.7
CC00G79300
Cyclotella cryptica
6.8e-18
93.6
128
36.7
gene10828
Fragilariopsis cylindrus
6.8e-18
93.6
215
27.4
gene16432
Fragilariopsis cylindrus
8.9e-18
93.2
223
27.8
tho132960
Thalassiosira oceanica
1.2e-17
92.8
117
42.7
fso33230
Fistulifera solaris
1.5e-17
92.4
219
27.9
tho196600
Thalassiosira oceanica
1.5e-17
92.4
238
25.6
tps64700
Thalassiosira pseudonana
2.0e-17
92.0
263
28.9
ps00G83920
Pseudo-nitzschia multiseries
2.6e-17
91.7
216
30.1
Sro107_g054050
Seminavis robusta
2.6e-17
91.7
184
31.5
ptri223660
Phaeodactylum tricornutum
3.4e-17
91.3
289
26.6
Sro299_g111360
Seminavis robusta
3.4e-17
91.3
218
28.4
sya00G12100
Synedra acus
3.4e-17
91.3
143
32.2
CC00G09230
Cyclotella cryptica
4.4e-17
90.9
283
26.1
Sro374_g129180
Seminavis robusta
5.8e-17
90.5
218
27.5
ptri32460
Phaeodactylum tricornutum
7.6e-17
90.1
131
36.6
CC00G125810
Cyclotella cryptica
1.7e-16
89.0
143
36.4
Sro975_g226830
Seminavis robusta
1.7e-16
89.0
238
26.1
Sro672_g185130
Seminavis robusta
2.2e-16
88.6
124
36.3
gene17789
Fragilariopsis cylindrus
2.9e-16
88.2
235
26.8
tps192360
Thalassiosira pseudonana
2.9e-16
88.2
126
38.1
ps00G96090
Pseudo-nitzschia multiseries
3.8e-16
87.8
221
25.8
Sro1228_g254370
Seminavis robusta
3.8e-16
87.8
234
25.2
sya00G52670
Synedra acus
8.4e-16
86.7
210
30.5
tho20540
Thalassiosira oceanica
8.4e-16
86.7
195
28.7
CC00G26170
Cyclotella cryptica
1.1e-15
86.3
261
25.3
PSNMU-V1.4_AUG-EV-PASAV3_0074230
Pseudo-nitzschia multistriata
1.1e-15
86.3
206
29.6
sya00G128810
Synedra acus
1.1e-15
86.3
137
35.0
ptri229170
Phaeodactylum tricornutum
2.4e-15
85.1
244
28.3
Sro299_g111470
Seminavis robusta
2.4e-15
85.1
211
29.4
sya00G205170
Synedra acus
2.4e-15
85.1
142
36.6
tho110160
Thalassiosira oceanica
2.4e-15
85.1
232
26.7
gene16545
Fragilariopsis cylindrus
3.2e-15
84.7
132
33.3
Sro776_g200870
Seminavis robusta
4.1e-15
84.3
222
28.4
tps31090
Thalassiosira pseudonana
5.4e-15
84.0
227
28.2
CC00G136890
Cyclotella cryptica
7.1e-15
83.6
268
25.0
tho224000
Thalassiosira oceanica
7.1e-15
83.6
313
26.8
fso123570
Fistulifera solaris
9.2e-15
83.2
211
28.4
fso195520
Fistulifera solaris
9.2e-15
83.2
124
34.7
Sro1353_g265400
Seminavis robusta
9.2e-15
83.2
141
32.6
tho222020
Thalassiosira oceanica
9.2e-15
83.2
283
24.4
tps170450
Thalassiosira pseudonana
1.2e-14
82.8
169
29.6
fso139480
Fistulifera solaris
1.6e-14
82.4
124
33.9
tho194020
Thalassiosira oceanica
1.6e-14
82.4
210
29.5
Sro844_g209850
Seminavis robusta
2.7e-14
81.6
199
28.6
tps31050
Thalassiosira pseudonana
2.7e-14
81.6
227
27.8
Sro299_g111340
Seminavis robusta
3.5e-14
81.3
277
23.8
Sro57_g033130
Seminavis robusta
4.6e-14
80.9
177
29.9
sya00G43360
Synedra acus
4.6e-14
80.9
124
33.1
fso54300
Fistulifera solaris
6.0e-14
80.5
165
30.3
Sro299_g111510
Seminavis robusta
6.0e-14
80.5
273
27.1
ps00G168960
Pseudo-nitzschia multiseries
7.8e-14
80.1
178
31.5
tps64680
Thalassiosira pseudonana
7.8e-14
80.1
222
27.5
Sro299_g111520
Seminavis robusta
1.0e-13
79.7
118
39.0
fso143570
Fistulifera solaris
1.3e-13
79.3
212
28.3
ps00G50150
Pseudo-nitzschia multiseries
1.3e-13
79.3
218
31.7
tps150290
Thalassiosira pseudonana
1.3e-13
79.3
165
32.7
fso90480
Fistulifera solaris
2.3e-13
78.6
131
33.6
Sro756_g197840
Seminavis robusta
2.3e-13
78.6
127
31.5
CC00G139230
Cyclotella cryptica
3.0e-13
78.2
272
25.7
CC00G172280
Cyclotella cryptica
3.9e-13
77.8
121
34.7
Sro299_g111490
Seminavis robusta
3.9e-13
77.8
138
33.3
CC00G152580
Cyclotella cryptica
8.6e-13
76.6
211
29.9
sya00G230590
Synedra acus
8.6e-13
76.6
272
24.6
sya00G242410
Synedra acus
8.6e-13
76.6
96
37.5
tho314880
Thalassiosira oceanica
8.6e-13
76.6
212
26.4
tps209500
Thalassiosira pseudonana
8.6e-13
76.6
251
25.1
CC00G32860
Cyclotella cryptica
1.1e-12
76.3
211
28.4
tps29530
Thalassiosira pseudonana
1.1e-12
76.3
219
27.9
Sro506_g156280
Seminavis robusta
1.5e-12
75.9
241
24.9
tps211660
Thalassiosira pseudonana
1.9e-12
75.5
113
33.6
fso54280
Fistulifera solaris
3.3e-12
74.7
116
37.9
fso179420
Fistulifera solaris
3.3e-12
74.7
129
31.8
ps00G78480
Pseudo-nitzschia multiseries
3.3e-12
74.7
138
31.2
ptri226930
Phaeodactylum tricornutum
3.3e-12
74.7
138
31.2
Sro176_g077270
Seminavis robusta
3.3e-12
74.7
223
24.7
tps170710
Thalassiosira pseudonana
4.3e-12
74.3
116
32.8
CC00G196020
Cyclotella cryptica
5.6e-12
73.9
293
25.3
fso180330
Fistulifera solaris
5.6e-12
73.9
210
28.1
tho592300
Thalassiosira oceanica
7.3e-12
73.6
108
35.2
fso123550
Fistulifera solaris
9.6e-12
73.2
116
35.3
tps29430
Thalassiosira pseudonana
9.6e-12
73.2
219
27.4
PSNMU-V1.4_AUG-EV-PASAV3_0062130
Pseudo-nitzschia multistriata
1.6e-11
72.4
122
33.6
Sro555_g165810
Seminavis robusta
1.6e-11
72.4
163
30.7
Sro1087_g239830
Seminavis robusta
1.6e-11
72.4
196
26.5
CC00G113840
Cyclotella cryptica
2.1e-11
72.0
116
31.9
CC00G154580
Cyclotella cryptica
2.1e-11
72.0
175
29.1
tps29510
Thalassiosira pseudonana
2.1e-11
72.0
233
29.2
sya00G256570
Synedra acus
2.8e-11
71.6
176
29.0
CC00G27720
Cyclotella cryptica
3.6e-11
71.2
179
30.7
fso125600
Fistulifera solaris
3.6e-11
71.2
138
31.2
tps38520
Thalassiosira pseudonana
3.6e-11
71.2
280
24.6
CC00G134640
Cyclotella cryptica
4.7e-11
70.9
188
28.2
fso184930
Fistulifera solaris
6.2e-11
70.5
211
28.0
ptri10280
Phaeodactylum tricornutum
6.2e-11
70.5
142
27.5
tps29390
Thalassiosira pseudonana
6.2e-11
70.5
182
31.9
CC00G13870
Cyclotella cryptica
8.1e-11
70.1
130
32.3
fso184000
Fistulifera solaris
8.1e-11
70.1
120
30.8
Sro776_g200900
Seminavis robusta
1.1e-10
69.7
256
22.3
CC00G198070
Cyclotella cryptica
1.4e-10
69.3
231
23.8
gene6749
Fragilariopsis cylindrus
1.4e-10
69.3
229
24.5
ps00G135050
Pseudo-nitzschia multiseries
1.4e-10
69.3
124
29.8
Sro718_g192230
Seminavis robusta
1.4e-10
69.3
232
26.3
tps102120
Thalassiosira pseudonana
1.4e-10
69.3
184
26.6
ptri223580
Phaeodactylum tricornutum
1.8e-10
68.9
241
25.7
CC00G06430
Cyclotella cryptica
2.4e-10
68.6
131
30.5
ptri21940
Phaeodactylum tricornutum
2.4e-10
68.6
140
30.0
tps106360
Thalassiosira pseudonana
2.4e-10
68.6
117
32.5
Sro1294_g260200
Seminavis robusta
3.1e-10
68.2
135
28.9
tps32140
Thalassiosira pseudonana
3.1e-10
68.2
176
27.3
CC00G51700
Cyclotella cryptica
4.0e-10
67.8
105
37.1
ps00G174510
Pseudo-nitzschia multiseries
4.0e-10
67.8
124
30.6
sya00G156000
Synedra acus
4.0e-10
67.8
137
29.9
gene9793
Fragilariopsis cylindrus
5.2e-10
67.4
222
23.4
gene3187
Fragilariopsis cylindrus
5.2e-10
67.4
149
30.9
ps00G155910
Pseudo-nitzschia multiseries
5.2e-10
67.4
222
24.8
tps105860
Thalassiosira pseudonana
5.2e-10
67.4
122
32.8
PSNMU-V1.4_AUG-EV-PASAV3_0095090
Pseudo-nitzschia multistriata
6.9e-10
67.0
124
30.6
tps29450
Thalassiosira pseudonana
6.9e-10
67.0
180
30.0
tps216790
Thalassiosira pseudonana
6.9e-10
67.0
224
23.2
CC00G124300
Cyclotella cryptica
8.9e-10
66.6
276
24.6
sya00G17600
Synedra acus
8.9e-10
66.6
112
33.0
gene14534
Fragilariopsis cylindrus
1.2e-09
66.2
124
30.6
gene516
Fragilariopsis cylindrus
1.2e-09
66.2
124
30.6
sya00G25330
Synedra acus
1.2e-09
66.2
181
28.2
CC00G168640
Cyclotella cryptica
2.0e-09
65.5
320
22.2
sya00G264280
Synedra acus
2.0e-09
65.5
190
26.8
tho102120
Thalassiosira oceanica
2.0e-09
65.5
210
25.7
tps105880
Thalassiosira pseudonana
2.0e-09
65.5
212
24.5
CC00G11110
Cyclotella cryptica
2.6e-09
65.1
130
28.5
sya00G117100
Synedra acus
2.6e-09
65.1
142
28.9
tps45290
Thalassiosira pseudonana
9.9e-09
63.2
119
27.7
tps204250
Thalassiosira pseudonana
9.9e-09
63.2
131
34.4
CC00G122630
Cyclotella cryptica
1.3e-08
62.8
123
31.7
ENSG00000105173
Homo sapiens
1.3e-08
62.8
214
22.0
fso180370
Fistulifera solaris
2.2e-08
62.0
161
29.2
tho256100
Thalassiosira oceanica
3.8e-08
61.2
124
30.6
tps95720
Thalassiosira pseudonana
4.9e-08
60.8
122
32.0
tps225460
Thalassiosira pseudonana
4.9e-08
60.8
272
25.4
tho39160
Thalassiosira oceanica
6.4e-08
60.5
221
22.2
tho377180
Thalassiosira oceanica
6.4e-08
60.5
211
23.7
sya00G02940
Synedra acus
8.4e-08
60.1
136
30.1
sya00G204800
Synedra acus
1.1e-07
59.7
135
25.9
fso182460
Fistulifera solaris
1.9e-07
58.9
121
34.7
tho435300
Thalassiosira oceanica
1.9e-07
58.9
102
34.3
CC00G175600
Cyclotella cryptica
2.4e-07
58.5
222
27.9
ps00G185530
Pseudo-nitzschia multiseries
2.4e-07
58.5
121
27.3
tho61040
Thalassiosira oceanica
2.4e-07
58.5
211
24.2
fso181370
Fistulifera solaris
4.2e-07
57.8
121
33.9
tps225440
Thalassiosira pseudonana
4.2e-07
57.8
197
27.4
CC00G11640
Cyclotella cryptica
7.1e-07
57.0
126
31.0
ENSG00000175305
Homo sapiens
7.1e-07
57.0
128
28.9
tho270080
Thalassiosira oceanica
7.1e-07
57.0
130
30.0
CC00G64720
Cyclotella cryptica
9.3e-07
56.6
126
30.2
tps15140
Thalassiosira pseudonana
9.3e-07
56.6
119
28.6
fso184970
Fistulifera solaris
1.6e-06
55.8
157
29.3
ps00G113470
Pseudo-nitzschia multiseries
2.1e-06
55.5
127
26.8
tho170540
Thalassiosira oceanica
2.1e-06
55.5
211
23.2
tho315300
Thalassiosira oceanica
2.1e-06
55.5
210
22.4
pte96890
Paramecium tetraurelia
2.7e-06
55.1
125
27.2
ptri09700
Phaeodactylum tricornutum
2.7e-06
55.1
210
23.3
CC00G21330
Cyclotella cryptica
4.6e-06
54.3
142
28.2
Sro2055_g312830
Seminavis robusta
6.0e-06
53.9
250
24.0
tho138240
Thalassiosira oceanica
7.8e-06
53.5
211
22.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (11 genes)
Thalassiosira pseudonana (33 genes)
Thalassiosira oceanica (20 genes)
Pseudo-nitzschia multiseries (12 genes)
Fistulifera solaris (28 genes)
Fragilariopsis cylindrus (10 genes)
Cyclotella cryptica (30 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (31 genes)
Synedra acus (18 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (5 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing