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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps118120
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps118120
Thalassiosira pseudonana
1.4e-173
610.1
303
100.0
tho196600
Thalassiosira oceanica
2.5e-24
114.4
291
30.2
ps00G78480
Pseudo-nitzschia multiseries
2.8e-23
110.9
221
32.1
ptri211550
Phaeodactylum tricornutum
3.6e-23
110.5
231
31.6
fso151960
Fistulifera solaris
1.0e-22
109.0
189
32.3
fso168420
Fistulifera solaris
2.3e-22
107.8
267
30.0
gene13799
Fragilariopsis cylindrus
9.8e-21
102.4
188
30.9
Sro748_g196620
Seminavis robusta
2.2e-20
101.3
239
31.4
fso33230
Fistulifera solaris
8.3e-20
99.4
196
32.1
ps00G185300
Pseudo-nitzschia multiseries
1.4e-19
98.6
190
30.0
tps71590
Thalassiosira pseudonana
1.4e-19
98.6
245
29.0
PSNMU-V1.4_AUG-EV-PASAV3_0005510
Pseudo-nitzschia multistriata
1.8e-19
98.2
224
28.6
sya00G205170
Synedra acus
1.8e-19
98.2
231
32.0
tps209500
Thalassiosira pseudonana
1.8e-19
98.2
188
32.4
ptri32460
Phaeodactylum tricornutum
2.4e-19
97.8
232
30.2
fso11540
Fistulifera solaris
3.2e-19
97.4
205
31.7
CC00G57010
Cyclotella cryptica
4.1e-19
97.1
262
26.3
gene6749
Fragilariopsis cylindrus
7.0e-19
96.3
191
29.3
gene9793
Fragilariopsis cylindrus
7.0e-19
96.3
179
31.8
fso113910
Fistulifera solaris
7.0e-19
96.3
205
31.2
tps109520
Thalassiosira pseudonana
7.0e-19
96.3
200
31.5
Sro1228_g254370
Seminavis robusta
1.6e-18
95.1
256
25.4
sya00G242400
Synedra acus
1.6e-18
95.1
209
27.8
ptri21940
Phaeodactylum tricornutum
2.0e-18
94.7
259
28.6
PSNMU-V1.4_AUG-EV-PASAV3_0030110
Pseudo-nitzschia multistriata
5.9e-18
93.2
224
30.4
Sro776_g200900
Seminavis robusta
5.9e-18
93.2
182
30.8
ptri21090
Phaeodactylum tricornutum
7.8e-18
92.8
186
32.8
ps00G155910
Pseudo-nitzschia multiseries
1.0e-17
92.4
189
28.0
CC00G196020
Cyclotella cryptica
1.3e-17
92.0
192
32.8
ps00G01920
Pseudo-nitzschia multiseries
1.3e-17
92.0
224
31.7
tho592300
Thalassiosira oceanica
1.3e-17
92.0
175
34.9
tps38520
Thalassiosira pseudonana
3.0e-17
90.9
221
31.2
Sro718_g192230
Seminavis robusta
3.9e-17
90.5
194
28.9
ptri223580
Phaeodactylum tricornutum
5.0e-17
90.1
221
33.0
sya00G43360
Synedra acus
8.6e-17
89.4
207
31.4
CC00G122630
Cyclotella cryptica
1.1e-16
89.0
264
25.0
CC00G125810
Cyclotella cryptica
1.1e-16
89.0
182
30.2
sya00G17600
Synedra acus
1.1e-16
89.0
262
27.5
tho20540
Thalassiosira oceanica
1.9e-16
88.2
232
26.7
gene6405
Fragilariopsis cylindrus
2.5e-16
87.8
228
26.8
fso180370
Fistulifera solaris
4.3e-16
87.0
223
29.6
tho194020
Thalassiosira oceanica
7.3e-16
86.3
216
29.6
ptri229170
Phaeodactylum tricornutum
9.5e-16
85.9
221
27.6
Sro506_g156280
Seminavis robusta
9.5e-16
85.9
266
24.4
sya00G53380
Synedra acus
9.5e-16
85.9
228
30.7
sya00G156000
Synedra acus
1.2e-15
85.5
219
27.9
sya00G264280
Synedra acus
1.2e-15
85.5
215
26.5
fso123550
Fistulifera solaris
1.6e-15
85.1
223
29.1
sya00G230590
Synedra acus
1.6e-15
85.1
185
28.6
CC00G168640
Cyclotella cryptica
2.1e-15
84.7
252
27.4
fso184970
Fistulifera solaris
2.1e-15
84.7
254
28.0
sya00G12100
Synedra acus
2.1e-15
84.7
223
28.7
fso54280
Fistulifera solaris
3.6e-15
84.0
223
28.7
tps150290
Thalassiosira pseudonana
3.6e-15
84.0
229
25.3
ps00G135050
Pseudo-nitzschia multiseries
4.7e-15
83.6
265
27.9
Sro776_g200870
Seminavis robusta
6.2e-15
83.2
197
27.9
Sro975_g226830
Seminavis robusta
1.0e-14
82.4
221
29.4
Sro107_g054050
Seminavis robusta
1.4e-14
82.0
225
25.8
ptri226930
Phaeodactylum tricornutum
1.8e-14
81.6
231
28.1
Sro176_g077270
Seminavis robusta
2.3e-14
81.3
192
27.6
fso179420
Fistulifera solaris
3.1e-14
80.9
175
28.0
sya00G256570
Synedra acus
3.1e-14
80.9
204
26.5
fso184000
Fistulifera solaris
4.0e-14
80.5
176
29.5
tho222020
Thalassiosira oceanica
6.8e-14
79.7
244
26.6
fso62790
Fistulifera solaris
2.0e-13
78.2
188
28.2
Sro844_g209850
Seminavis robusta
2.6e-13
77.8
225
29.3
Sro57_g033130
Seminavis robusta
2.6e-13
77.8
225
29.3
tps170710
Thalassiosira pseudonana
2.6e-13
77.8
217
27.2
fso98040
Fistulifera solaris
3.4e-13
77.4
188
27.7
Sro374_g129180
Seminavis robusta
4.4e-13
77.0
222
26.6
Sro458_g147090
Seminavis robusta
4.4e-13
77.0
216
26.4
tho132960
Thalassiosira oceanica
4.4e-13
77.0
192
29.7
CC00G124300
Cyclotella cryptica
5.8e-13
76.6
226
26.5
tps102120
Thalassiosira pseudonana
7.5e-13
76.3
185
27.6
CC00G09230
Cyclotella cryptica
9.8e-13
75.9
231
30.3
tho110160
Thalassiosira oceanica
1.3e-12
75.5
275
25.5
fso90480
Fistulifera solaris
2.9e-12
74.3
186
29.6
gene7436
Fragilariopsis cylindrus
4.9e-12
73.6
113
35.4
PSNMU-V1.4_AUG-EV-PASAV3_0074230
Pseudo-nitzschia multistriata
4.9e-12
73.6
185
27.6
ps00G49760
Pseudo-nitzschia multiseries
4.9e-12
73.6
208
28.4
fso109690
Fistulifera solaris
6.4e-12
73.2
176
27.3
sya00G52670
Synedra acus
6.4e-12
73.2
207
30.9
PSNMU-V1.4_AUG-EV-PASAV3_0066060
Pseudo-nitzschia multistriata
1.1e-11
72.4
227
25.6
CC00G172280
Cyclotella cryptica
1.9e-11
71.6
240
27.5
Sro1353_g265400
Seminavis robusta
1.9e-11
71.6
250
25.6
Sro1512_g278790
Seminavis robusta
1.9e-11
71.6
173
28.3
fso39760
Fistulifera solaris
2.4e-11
71.2
176
27.3
gene3187
Fragilariopsis cylindrus
3.2e-11
70.9
127
32.3
Sro3210_g345280
Seminavis robusta
3.2e-11
70.9
191
28.8
Sro299_g111270
Seminavis robusta
3.2e-11
70.9
191
28.8
tps32140
Thalassiosira pseudonana
3.2e-11
70.9
192
26.6
CC00G139230
Cyclotella cryptica
4.1e-11
70.5
183
27.9
gene14534
Fragilariopsis cylindrus
4.1e-11
70.5
187
28.3
gene516
Fragilariopsis cylindrus
4.1e-11
70.5
187
28.3
gene10828
Fragilariopsis cylindrus
9.2e-11
69.3
182
27.5
tho314880
Thalassiosira oceanica
1.6e-10
68.6
191
28.3
tps31050
Thalassiosira pseudonana
1.6e-10
68.6
187
29.4
tps97340
Thalassiosira pseudonana
2.0e-10
68.2
192
26.0
tps105880
Thalassiosira pseudonana
2.0e-10
68.2
201
28.4
ps00G174510
Pseudo-nitzschia multiseries
2.7e-10
67.8
193
26.9
Sro299_g111340
Seminavis robusta
2.7e-10
67.8
182
28.6
tps31090
Thalassiosira pseudonana
3.5e-10
67.4
188
30.3
CC00G113840
Cyclotella cryptica
4.6e-10
67.0
233
25.3
Sro1087_g239840
Seminavis robusta
4.6e-10
67.0
183
29.0
tps29530
Thalassiosira pseudonana
6.0e-10
66.6
186
31.7
tps170450
Thalassiosira pseudonana
7.8e-10
66.2
233
27.5
ptri223660
Phaeodactylum tricornutum
1.0e-09
65.9
193
25.4
ptri64980
Phaeodactylum tricornutum
1.3e-09
65.5
188
25.5
tps29430
Thalassiosira pseudonana
1.3e-09
65.5
186
30.1
CC00G13180
Cyclotella cryptica
1.7e-09
65.1
183
25.7
CC00G64720
Cyclotella cryptica
1.7e-09
65.1
197
27.9
ps00G96090
Pseudo-nitzschia multiseries
1.7e-09
65.1
215
24.2
sya00G02940
Synedra acus
1.7e-09
65.1
199
24.6
tps105860
Thalassiosira pseudonana
1.7e-09
65.1
123
30.9
CC00G13870
Cyclotella cryptica
2.3e-09
64.7
187
26.7
fso08560
Fistulifera solaris
3.9e-09
63.9
177
29.4
fso89100
Fistulifera solaris
5.0e-09
63.5
177
29.4
PSNMU-V1.4_AUG-EV-PASAV3_0095090
Pseudo-nitzschia multistriata
6.6e-09
63.2
216
26.4
tps192360
Thalassiosira pseudonana
6.6e-09
63.2
162
27.8
ptri158990
Phaeodactylum tricornutum
8.6e-09
62.8
137
27.7
CC00G82150
Cyclotella cryptica
1.1e-08
62.4
91
35.2
fso143640
Fistulifera solaris
1.1e-08
62.4
223
26.9
Sro560_g166640
Seminavis robusta
1.1e-08
62.4
175
27.4
tho270080
Thalassiosira oceanica
1.1e-08
62.4
216
21.8
tps211660
Thalassiosira pseudonana
1.5e-08
62.0
89
37.1
CC00G134640
Cyclotella cryptica
1.9e-08
61.6
181
26.0
Sro1294_g260200
Seminavis robusta
2.5e-08
61.2
283
25.8
CC00G175600
Cyclotella cryptica
3.3e-08
60.8
231
26.0
AA0017G01530
Aureococcus anophagefferens
4.3e-08
60.5
114
35.1
ps00G83920
Pseudo-nitzschia multiseries
4.3e-08
60.5
186
29.0
CC00G32860
Cyclotella cryptica
5.6e-08
60.1
214
25.2
Sro672_g185130
Seminavis robusta
5.6e-08
60.1
175
24.6
sya00G204800
Synedra acus
5.6e-08
60.1
174
23.0
CC00G47830
Cyclotella cryptica
7.3e-08
59.7
115
26.1
CC00G79300
Cyclotella cryptica
7.3e-08
59.7
115
26.1
gene17789
Fragilariopsis cylindrus
9.5e-08
59.3
177
24.9
CC00G21330
Cyclotella cryptica
2.1e-07
58.2
181
27.1
CC00G152580
Cyclotella cryptica
2.1e-07
58.2
244
25.0
fso15630
Fistulifera solaris
2.1e-07
58.2
178
28.7
AT3G50070
Arabidopsis thaliana
2.8e-07
57.8
253
24.5
tho332820
Thalassiosira oceanica
2.8e-07
57.8
245
23.7
gene5301
Fragilariopsis cylindrus
3.6e-07
57.4
113
32.7
Sro299_g111520
Seminavis robusta
4.7e-07
57.0
188
25.0
CC00G11110
Cyclotella cryptica
1.4e-06
55.5
186
21.5
sya00G242410
Synedra acus
1.4e-06
55.5
91
34.1
tps217010
Thalassiosira pseudonana
2.3e-06
54.7
133
29.3
tho102120
Thalassiosira oceanica
4.0e-06
53.9
182
25.3
CC00G06430
Cyclotella cryptica
8.9e-06
52.8
178
25.8
tps106360
Thalassiosira pseudonana
8.9e-06
52.8
111
25.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (10 genes)
Thalassiosira pseudonana (21 genes)
Thalassiosira oceanica (11 genes)
Pseudo-nitzschia multiseries (9 genes)
Fistulifera solaris (20 genes)
Fragilariopsis cylindrus (11 genes)
Cyclotella cryptica (23 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (23 genes)
Synedra acus (14 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (5 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing