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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps110600
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps110600
Thalassiosira pseudonana
0.0e+00
1117.4
602
100.0
tho28440
Thalassiosira oceanica
1.5e-108
395.2
588
41.2
CC00G161590
Cyclotella cryptica
1.6e-75
285.4
202
64.9
tho60160
Thalassiosira oceanica
3.7e-72
274.2
203
63.1
CC00G180580
Cyclotella cryptica
1.3e-43
179.5
192
52.6
sya00G14230
Synedra acus
3.0e-37
158.3
200
41.0
sya00G153270
Synedra acus
5.1e-37
157.5
201
41.8
sya00G267560
Synedra acus
1.1e-36
156.4
212
40.1
Naga_100004g56
Nannochloropsis gaditana
1.5e-36
156.0
196
42.3
ps00G78420
Pseudo-nitzschia multiseries
3.3e-36
154.8
198
40.4
ptri09360
Phaeodactylum tricornutum
4.8e-35
151.0
262
33.2
gene19911
Fragilariopsis cylindrus
6.2e-35
150.6
199
35.2
fso169000
Fistulifera solaris
1.1e-34
149.8
227
36.1
fso151400
Fistulifera solaris
3.1e-34
148.3
226
36.7
PSNMU-V1.4_AUG-EV-PASAV3_0037610
Pseudo-nitzschia multistriata
4.0e-34
147.9
273
32.6
sya00G83920
Synedra acus
4.0e-34
147.9
197
37.6
Sro834_g208640
Seminavis robusta
2.6e-33
145.2
189
39.7
Ec-04_004960
Ectocarpus siliculosus
1.0e-32
143.3
225
36.4
fso100700
Fistulifera solaris
4.9e-32
141.0
192
38.5
fso16860
Fistulifera solaris
6.5e-32
140.6
232
36.6
fso71570
Fistulifera solaris
8.4e-32
140.2
203
38.9
fso191140
Fistulifera solaris
5.5e-31
137.5
197
39.1
Sro30_g019850
Seminavis robusta
5.5e-31
137.5
211
35.5
fso173960
Fistulifera solaris
1.2e-30
136.3
213
37.1
fso141110
Fistulifera solaris
2.7e-30
135.2
226
37.2
Sro885_g216060
Seminavis robusta
4.8e-27
124.4
214
34.6
Sro741_g195680
Seminavis robusta
1.1e-26
123.2
217
35.0
ptri195090
Phaeodactylum tricornutum
1.4e-26
122.9
206
36.4
CC00G102660
Cyclotella cryptica
3.1e-26
121.7
254
32.7
tho05480
Thalassiosira oceanica
6.9e-26
120.6
231
33.3
sya00G66250
Synedra acus
4.5e-25
117.9
214
34.1
sya00G103610
Synedra acus
1.0e-24
116.7
234
31.2
Pp3c10_5500
Physcomitrella patens
1.3e-24
116.3
182
33.5
ccr79440
Chondrus crispus
8.4e-24
113.6
243
30.9
Sro569_g168290
Seminavis robusta
7.1e-23
110.5
165
38.2
emh734290
Emiliania huxleyi
9.3e-23
110.2
179
35.8
AT4G25720
Arabidopsis thaliana
1.2e-22
109.8
185
36.2
ps00G196410
Pseudo-nitzschia multiseries
1.8e-21
105.9
190
33.2
PSNMU-V1.4_AUG-EV-PASAV3_0018080
Pseudo-nitzschia multistriata
3.1e-18
95.1
216
28.2
PSNMU-V1.4_AUG-EV-PASAV3_0034070
Pseudo-nitzschia multistriata
5.3e-18
94.4
216
28.2
sya00G252540
Synedra acus
1.2e-17
93.2
189
30.7
AA0088G00020
Aureococcus anophagefferens
7.7e-17
90.5
184
34.8
pte506270
Paramecium tetraurelia
1.3e-16
89.7
206
30.6
pte576470
Paramecium tetraurelia
1.3e-16
89.7
199
31.2
CM15G01460
Cyanidioschyzon merolae
5.5e-15
84.3
208
28.8
Cre11.g476150
Chlamydomonas reinhardtii
7.2e-15
84.0
193
29.0
gene7759
Fragilariopsis cylindrus
1.4e-13
79.7
210
27.6
PSNMU-V1.4_AUG-EV-PASAV3_0057460
Pseudo-nitzschia multistriata
2.0e-12
75.9
215
23.7
emh295370
Emiliania huxleyi
8.2e-11
70.5
172
27.3
pte632010
Paramecium tetraurelia
5.9e-09
64.3
185
21.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (8 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (5 genes)
Synedra acus (7 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (4 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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