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Interactive Phylogenetics Module
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho529120
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho529120
Thalassiosira oceanica
4.7e-100
365.2
176
100.0
tho288900
Thalassiosira oceanica
2.1e-60
233.4
214
61.7
tho55180
Thalassiosira oceanica
1.4e-32
141.0
236
38.6
tho273200
Thalassiosira oceanica
1.9e-32
140.6
236
38.1
CC00G27860
Cyclotella cryptica
2.8e-28
126.7
220
40.5
CC00G58140
Cyclotella cryptica
4.8e-28
125.9
220
40.5
CC00G202750
Cyclotella cryptica
6.3e-28
125.6
220
39.5
CC00G137730
Cyclotella cryptica
6.9e-27
122.1
212
40.1
CC00G57070
Cyclotella cryptica
2.7e-23
110.2
219
35.6
CC00G171140
Cyclotella cryptica
3.6e-23
109.8
219
35.2
tho37140
Thalassiosira oceanica
3.6e-23
109.8
214
36.4
tho72160
Thalassiosira oceanica
1.4e-22
107.8
214
36.4
CC00G177430
Cyclotella cryptica
2.0e-21
104.0
214
33.6
CC00G104650
Cyclotella cryptica
2.6e-21
103.6
219
35.2
CC00G171670
Cyclotella cryptica
2.6e-21
103.6
174
39.7
CC00G118060
Cyclotella cryptica
4.4e-21
102.8
214
33.2
CC00G143740
Cyclotella cryptica
2.8e-20
100.1
196
33.2
CC00G103300
Cyclotella cryptica
4.8e-20
99.4
187
37.4
tho53680
Thalassiosira oceanica
4.8e-20
99.4
215
34.9
CC00G118650
Cyclotella cryptica
1.8e-19
97.4
219
35.6
sya00G76740
Synedra acus
3.1e-19
96.7
168
36.9
sya00G135040
Synedra acus
4.1e-19
96.3
207
31.4
CC00G190230
Cyclotella cryptica
5.3e-19
95.9
219
36.1
fso160210
Fistulifera solaris
5.3e-19
95.9
215
31.2
CC00G24730
Cyclotella cryptica
1.2e-18
94.7
216
34.7
CC00G78130
Cyclotella cryptica
1.2e-18
94.7
219
34.7
sya00G132040
Synedra acus
1.2e-18
94.7
161
35.4
fso36690
Fistulifera solaris
1.6e-18
94.4
222
31.5
sya00G45780
Synedra acus
2.6e-18
93.6
164
37.2
CC00G148620
Cyclotella cryptica
3.5e-18
93.2
171
38.6
PSNMU-V1.4_AUG-EV-PASAV3_0010630
Pseudo-nitzschia multistriata
3.5e-18
93.2
166
36.1
PSNMU-V1.4_AUG-EV-PASAV3_0006880
Pseudo-nitzschia multistriata
3.5e-18
93.2
214
32.7
sya00G16890
Synedra acus
3.5e-18
93.2
215
31.2
sya00G15860
Synedra acus
5.9e-18
92.4
161
34.2
sya00G15850
Synedra acus
7.7e-18
92.0
161
34.2
fso102290
Fistulifera solaris
1.0e-17
91.7
160
37.5
sya00G114720
Synedra acus
1.3e-17
91.3
187
33.7
fso112160
Fistulifera solaris
2.2e-17
90.5
164
36.6
sya00G115070
Synedra acus
2.2e-17
90.5
217
31.8
CC00G169820
Cyclotella cryptica
2.9e-17
90.1
214
31.8
fso159750
Fistulifera solaris
6.5e-17
89.0
160
38.8
CC00G108410
Cyclotella cryptica
8.5e-17
88.6
216
32.9
CC00G209510
Cyclotella cryptica
1.1e-16
88.2
219
33.3
fso21490
Fistulifera solaris
1.1e-16
88.2
164
34.8
sya00G186490
Synedra acus
1.1e-16
88.2
208
28.4
tho336920
Thalassiosira oceanica
1.1e-16
88.2
167
34.1
PSNMU-V1.4_AUG-EV-PASAV3_0007450
Pseudo-nitzschia multistriata
1.9e-16
87.4
213
31.0
CC00G150720
Cyclotella cryptica
5.5e-16
85.9
215
32.1
PSNMU-V1.4_AUG-EV-PASAV3_0095170
Pseudo-nitzschia multistriata
5.5e-16
85.9
213
30.5
sya00G48690
Synedra acus
1.2e-15
84.7
206
31.1
sya00G75660
Synedra acus
2.1e-15
84.0
201
29.4
sya00G106280
Synedra acus
2.1e-15
84.0
208
28.8
tho57340
Thalassiosira oceanica
2.1e-15
84.0
215
29.3
CC00G17990
Cyclotella cryptica
4.7e-15
82.8
170
35.9
CC00G117070
Cyclotella cryptica
8.0e-15
82.0
170
36.5
sya00G50540
Synedra acus
8.0e-15
82.0
165
30.3
sya00G119770
Synedra acus
8.0e-15
82.0
204
31.9
CC00G92050
Cyclotella cryptica
1.0e-14
81.6
185
36.2
sya00G19730
Synedra acus
1.0e-14
81.6
167
35.9
tho296820
Thalassiosira oceanica
1.0e-14
81.6
196
31.6
fso122320
Fistulifera solaris
1.8e-14
80.9
165
35.8
PSNMU-V1.4_AUG-EV-PASAV3_0071490
Pseudo-nitzschia multistriata
1.8e-14
80.9
173
34.1
PSNMU-V1.4_AUG-EV-PASAV3_0078090
Pseudo-nitzschia multistriata
2.3e-14
80.5
171
33.9
fso85840
Fistulifera solaris
3.0e-14
80.1
169
33.7
sya00G59210
Synedra acus
4.0e-14
79.7
177
32.8
sya00G135190
Synedra acus
4.0e-14
79.7
172
34.3
fso63240
Fistulifera solaris
8.8e-14
78.6
169
33.1
sya00G111970
Synedra acus
1.1e-13
78.2
166
32.5
sya00G179270
Synedra acus
1.1e-13
78.2
222
31.1
CC00G34080
Cyclotella cryptica
1.5e-13
77.8
160
34.4
sya00G179280
Synedra acus
1.5e-13
77.8
143
31.5
fso109400
Fistulifera solaris
2.0e-13
77.4
167
32.3
sya00G249630
Synedra acus
7.5e-13
75.5
79
43.0
PSNMU-V1.4_AUG-EV-PASAV3_0039690
Pseudo-nitzschia multistriata
1.7e-12
74.3
172
31.4
PSNMU-V1.4_AUG-EV-PASAV3_0085240
Pseudo-nitzschia multistriata
2.8e-12
73.6
167
32.3
sya00G129710
Synedra acus
2.8e-12
73.6
173
34.1
sya00G112170
Synedra acus
3.7e-12
73.2
83
42.2
sya00G229010
Synedra acus
3.7e-12
73.2
158
33.5
CC00G79940
Cyclotella cryptica
6.3e-12
72.4
98
42.9
PSNMU-V1.4_AUG-EV-PASAV3_0053460
Pseudo-nitzschia multistriata
6.3e-12
72.4
165
32.1
sya00G142100
Synedra acus
6.3e-12
72.4
172
31.4
fso87390
Fistulifera solaris
1.1e-11
71.6
160
33.8
sya00G88730
Synedra acus
1.1e-11
71.6
68
52.9
sya00G119550
Synedra acus
1.4e-11
71.2
182
30.8
fso186580
Fistulifera solaris
1.8e-11
70.9
160
33.1
sya00G68790
Synedra acus
2.4e-11
70.5
102
37.3
sya00G48890
Synedra acus
3.1e-11
70.1
112
37.5
fso202720
Fistulifera solaris
4.1e-11
69.7
160
33.8
PSNMU-V1.4_AUG-EV-PASAV3_0061400
Pseudo-nitzschia multistriata
4.1e-11
69.7
171
29.8
sya00G178370
Synedra acus
5.3e-11
69.3
68
51.5
sya00G167920
Synedra acus
7.0e-11
68.9
136
30.9
PSNMU-V1.4_AUG-EV-PASAV3_0055470
Pseudo-nitzschia multistriata
9.1e-11
68.6
172
30.2
sya00G61380
Synedra acus
9.1e-11
68.6
52
51.9
sya00G111980
Synedra acus
9.1e-11
68.6
152
34.9
sya00G145070
Synedra acus
1.2e-10
68.2
169
33.1
sya00G164780
Synedra acus
1.2e-10
68.2
200
26.0
sya00G19550
Synedra acus
1.6e-10
67.8
51
54.9
sya00G97450
Synedra acus
2.0e-10
67.4
68
48.5
sya00G255000
Synedra acus
2.0e-10
67.4
145
33.1
fso105830
Fistulifera solaris
2.7e-10
67.0
56
48.2
tho579120
Thalassiosira oceanica
2.7e-10
67.0
138
37.7
sya00G203870
Synedra acus
3.5e-10
66.6
52
50.0
sya00G06410
Synedra acus
4.5e-10
66.2
73
39.7
sya00G113100
Synedra acus
4.5e-10
66.2
202
26.2
sya00G57800
Synedra acus
5.9e-10
65.9
58
51.7
sya00G196370
Synedra acus
5.9e-10
65.9
93
35.5
sya00G186380
Synedra acus
7.7e-10
65.5
102
34.3
sya00G206420
Synedra acus
1.7e-09
64.3
88
38.6
sya00G97280
Synedra acus
2.2e-09
63.9
45
62.2
sya00G130570
Synedra acus
2.2e-09
63.9
102
33.3
sya00G231330
Synedra acus
2.2e-09
63.9
206
26.2
sya00G09330
Synedra acus
2.9e-09
63.5
41
63.4
sya00G97480
Synedra acus
3.8e-09
63.2
68
50.0
sya00G157350
Synedra acus
5.0e-09
62.8
163
32.5
sya00G61280
Synedra acus
6.5e-09
62.4
60
51.7
sya00G133400
Synedra acus
8.5e-09
62.0
88
37.5
CC00G151830
Cyclotella cryptica
1.1e-08
61.6
143
32.2
sya00G238470
Synedra acus
1.1e-08
61.6
114
31.6
sya00G247750
Synedra acus
1.1e-08
61.6
53
49.1
PSNMU-V1.4_AUG-EV-PASAV3_0088390
Pseudo-nitzschia multistriata
1.9e-08
60.8
171
28.1
CC00G54730
Cyclotella cryptica
2.5e-08
60.5
194
30.9
sya00G11480
Synedra acus
2.5e-08
60.5
109
33.0
sya00G155040
Synedra acus
3.2e-08
60.1
47
57.4
sya00G31870
Synedra acus
4.2e-08
59.7
50
48.0
sya00G82730
Synedra acus
5.5e-08
59.3
205
27.3
sya00G89830
Synedra acus
5.5e-08
59.3
41
61.0
sya00G89860
Synedra acus
5.5e-08
59.3
58
46.6
sya00G154570
Synedra acus
9.4e-08
58.5
59
49.2
sya00G60470
Synedra acus
1.2e-07
58.2
54
50.0
sya00G190030
Synedra acus
1.2e-07
58.2
41
63.4
sya00G244460
Synedra acus
3.6e-07
56.6
85
36.5
sya00G109280
Synedra acus
4.7e-07
56.2
58
44.8
sya00G213030
Synedra acus
4.7e-07
56.2
58
44.8
sya00G245270
Synedra acus
8.0e-07
55.5
52
44.2
sya00G256420
Synedra acus
1.0e-06
55.1
67
40.3
sya00G51930
Synedra acus
2.3e-06
53.9
135
32.6
CC00G27340
Cyclotella cryptica
5.2e-06
52.8
78
43.6
sya00G07560
Synedra acus
5.2e-06
52.8
71
49.3
CC00G68020
Cyclotella cryptica
6.8e-06
52.4
139
30.2
sya00G119800
Synedra acus
6.8e-06
52.4
49
46.9
CC00G27330
Cyclotella cryptica
8.8e-06
52.0
89
34.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (11 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (14 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (31 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (73 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (12 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing