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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho376700
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho376700
Thalassiosira oceanica
0.0e+00
1107.4
538
100.0
tho68000
Thalassiosira oceanica
2.1e-66
255.0
346
41.0
tps232400
Thalassiosira pseudonana
1.2e-58
229.2
348
40.2
tps222350
Thalassiosira pseudonana
1.2e-56
222.6
340
38.8
Sro218_g090170
Seminavis robusta
2.6e-56
221.5
343
37.9
Sro1843_g301180
Seminavis robusta
2.0e-48
195.3
346
33.8
tps69300
Thalassiosira pseudonana
2.0e-48
195.3
299
39.1
Sro1843_g301190
Seminavis robusta
1.8e-46
188.7
345
33.0
tps234210
Thalassiosira pseudonana
7.3e-43
176.8
400
30.8
Sro158_g071500
Seminavis robusta
6.4e-39
163.7
352
33.8
fso129830
Fistulifera solaris
1.9e-38
162.2
351
30.8
tps232920
Thalassiosira pseudonana
2.0e-37
158.7
319
34.2
fso140140
Fistulifera solaris
4.6e-37
157.5
383
29.8
Sro202_g085470
Seminavis robusta
6.6e-36
153.7
372
31.5
Sro3_g001980
Seminavis robusta
3.1e-33
144.8
351
30.2
tho177460
Thalassiosira oceanica
3.9e-28
127.9
70
90.0
tho434140
Thalassiosira oceanica
8.1e-26
120.2
147
51.7
tho225460
Thalassiosira oceanica
3.1e-25
118.2
71
83.1
tho442280
Thalassiosira oceanica
1.8e-17
92.4
57
77.2
tps210380
Thalassiosira pseudonana
9.9e-16
86.7
158
37.3
tho182640
Thalassiosira oceanica
5.6e-11
70.9
34
94.1
tho325740
Thalassiosira oceanica
2.8e-10
68.6
34
91.2
tho196640
Thalassiosira oceanica
1.5e-08
62.8
32
87.5
tho359640
Thalassiosira oceanica
1.5e-08
62.8
29
96.6
tho552380
Thalassiosira oceanica
5.8e-08
60.8
30
93.3
tho418820
Thalassiosira oceanica
9.9e-08
60.1
30
90.0
tho554380
Thalassiosira oceanica
9.9e-08
60.1
30
90.0
tho473420
Thalassiosira oceanica
1.3e-07
59.7
39
79.5
tho350940
Thalassiosira oceanica
3.8e-07
58.2
29
89.7
tho180720
Thalassiosira oceanica
4.9e-07
57.8
30
83.3
tho80180
Thalassiosira oceanica
8.4e-07
57.0
33
78.8
tho420940
Thalassiosira oceanica
8.4e-07
57.0
30
80.0
tho476360
Thalassiosira oceanica
1.4e-06
56.2
30
80.0
tho656220
Thalassiosira oceanica
1.9e-06
55.8
30
86.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (6 genes)
Thalassiosira oceanica (20 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (6 genes)
Synedra acus (0 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing