Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho319540
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho319540
Thalassiosira oceanica
0.0e+00
1483.4
816
100.0
tho384760
Thalassiosira oceanica
7.9e-174
612.5
385
84.2
tho515980
Thalassiosira oceanica
3.6e-134
480.7
262
93.1
tho99960
Thalassiosira oceanica
1.3e-131
472.2
373
68.6
tho277660
Thalassiosira oceanica
8.0e-118
426.4
324
69.1
tho182360
Thalassiosira oceanica
2.8e-107
391.3
341
62.8
tho372160
Thalassiosira oceanica
4.4e-100
367.5
420
53.1
tho25160
Thalassiosira oceanica
9.6e-71
270.0
257
54.1
tho345760
Thalassiosira oceanica
1.1e-69
266.5
237
61.2
tho390780
Thalassiosira oceanica
2.0e-68
262.3
331
46.5
tho183840
Thalassiosira oceanica
6.6e-64
247.3
255
51.4
tho60340
Thalassiosira oceanica
1.1e-63
246.5
291
48.5
tho191880
Thalassiosira oceanica
1.1e-63
246.5
317
46.4
tho305960
Thalassiosira oceanica
1.0e-56
223.4
153
69.9
tho209620
Thalassiosira oceanica
2.2e-30
136.0
84
82.1
tho155500
Thalassiosira oceanica
4.5e-28
128.3
248
36.7
tho199380
Thalassiosira oceanica
5.9e-28
127.9
240
33.3
tho652160
Thalassiosira oceanica
6.7e-24
114.4
78
83.3
CC00G152580
Cyclotella cryptica
5.0e-19
98.2
249
30.5
tho102120
Thalassiosira oceanica
5.0e-19
98.2
205
33.2
CC00G32860
Cyclotella cryptica
1.6e-17
93.2
209
30.6
CC00G175600
Cyclotella cryptica
3.6e-17
92.0
255
29.8
tho435300
Thalassiosira oceanica
7.9e-17
90.9
174
38.5
CC00G136890
Cyclotella cryptica
3.9e-16
88.6
218
30.3
tps31050
Thalassiosira pseudonana
5.2e-16
88.2
298
27.9
tps105880
Thalassiosira pseudonana
5.2e-16
88.2
284
28.9
tho377180
Thalassiosira oceanica
5.7e-15
84.7
256
29.3
tps105860
Thalassiosira pseudonana
2.2e-14
82.8
259
30.1
tho170540
Thalassiosira oceanica
6.3e-14
81.3
225
31.1
tps29430
Thalassiosira pseudonana
8.2e-14
80.9
212
29.7
tho61040
Thalassiosira oceanica
1.1e-13
80.5
256
28.9
tho138240
Thalassiosira oceanica
2.4e-13
79.3
314
26.8
tps29390
Thalassiosira pseudonana
3.1e-13
79.0
300
25.3
tps29510
Thalassiosira pseudonana
3.1e-13
79.0
170
31.8
tps29450
Thalassiosira pseudonana
1.2e-12
77.0
175
30.9
tho222020
Thalassiosira oceanica
2.0e-12
76.3
189
32.3
tho315300
Thalassiosira oceanica
3.5e-12
75.5
223
30.5
ptri229170
Phaeodactylum tricornutum
5.9e-12
74.7
207
27.5
tps225440
Thalassiosira pseudonana
3.8e-11
72.0
200
29.5
ps00G01920
Pseudo-nitzschia multiseries
8.5e-11
70.9
212
28.8
Sro458_g147090
Seminavis robusta
8.5e-11
70.9
177
29.4
tps126430
Thalassiosira pseudonana
8.5e-11
70.9
218
30.3
Sro506_g156280
Seminavis robusta
1.1e-10
70.5
203
24.6
Sro1228_g254370
Seminavis robusta
1.5e-10
70.1
246
26.0
sya00G43360
Synedra acus
2.5e-10
69.3
204
27.5
tps64720
Thalassiosira pseudonana
3.2e-10
68.9
150
33.3
PSNMU-V1.4_AUG-EV-PASAV3_0030110
Pseudo-nitzschia multistriata
4.2e-10
68.6
212
28.3
gene6405
Fragilariopsis cylindrus
9.4e-10
67.4
180
26.7
Sro245_g097390
Seminavis robusta
2.7e-09
65.9
188
27.1
tps64700
Thalassiosira pseudonana
3.6e-09
65.5
225
29.3
fso33230
Fistulifera solaris
1.4e-08
63.5
163
28.2
CC00G124300
Cyclotella cryptica
1.8e-08
63.2
292
26.0
CC00G198070
Cyclotella cryptica
3.0e-08
62.4
203
24.6
Sro1512_g278790
Seminavis robusta
3.0e-08
62.4
241
27.4
CC00G13870
Cyclotella cryptica
5.2e-08
61.6
233
23.6
Sro672_g185130
Seminavis robusta
6.7e-08
61.2
138
32.6
Sro718_g192230
Seminavis robusta
1.2e-07
60.5
174
25.3
fso139480
Fistulifera solaris
4.4e-07
58.5
202
23.8
Sro331_g119100
Seminavis robusta
5.7e-07
58.2
168
29.2
tho592300
Thalassiosira oceanica
5.7e-07
58.2
132
27.3
ps00G192350
Pseudo-nitzschia multiseries
7.5e-07
57.8
211
24.6
CC00G27720
Cyclotella cryptica
9.7e-07
57.4
192
23.4
fso195520
Fistulifera solaris
9.7e-07
57.4
246
22.4
tho412360
Thalassiosira oceanica
1.7e-06
56.6
146
31.5
gene12906
Fragilariopsis cylindrus
2.8e-06
55.8
171
29.2
Sro374_g129180
Seminavis robusta
4.8e-06
55.1
188
27.7
Sro1087_g239840
Seminavis robusta
4.8e-06
55.1
258
22.1
tps76060
Thalassiosira pseudonana
4.8e-06
55.1
136
29.4
Sro1087_g239830
Seminavis robusta
8.2e-06
54.3
199
22.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (12 genes)
Thalassiosira oceanica (28 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (3 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (8 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (11 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing