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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho242420
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho242420
Thalassiosira oceanica
0.0e+00
1075.1
558
100.0
Sro1515_g279010
Seminavis robusta
7.1e-126
452.6
563
46.2
sya00G08940
Synedra acus
3.0e-116
420.6
562
43.8
PSNMU-V1.4_AUG-EV-PASAV3_0041320
Pseudo-nitzschia multistriata
2.5e-110
401.0
575
43.8
fso93520
Fistulifera solaris
6.7e-108
392.9
551
43.0
fso158870
Fistulifera solaris
4.8e-106
386.7
536
43.3
ps00G80310
Pseudo-nitzschia multiseries
1.4e-81
305.4
455
41.1
gene15027
Fragilariopsis cylindrus
6.5e-71
270.0
454
36.3
AT1G15170
Arabidopsis thaliana
1.2e-24
116.3
520
26.0
AT4G23030
Arabidopsis thaliana
3.5e-24
114.8
401
27.7
Pp3c4_16610
Physcomitrella patens
3.5e-24
114.8
421
24.9
Cre12.g499700
Chlamydomonas reinhardtii
4.6e-24
114.4
420
30.2
AT1G15180
Arabidopsis thaliana
3.9e-23
111.3
521
26.7
AT1G15150
Arabidopsis thaliana
1.9e-22
109.0
559
23.8
Sro15_g011090
Seminavis robusta
9.6e-22
106.7
398
26.9
SPAC11D3.06
Schizosaccharomyces pombe
1.2e-21
106.3
404
27.2
AT1G61890
Arabidopsis thaliana
1.6e-21
105.9
416
25.2
AT1G11670
Arabidopsis thaliana
4.7e-21
104.4
416
24.5
AT2G04080
Arabidopsis thaliana
4.7e-21
104.4
414
25.4
AT1G15160
Arabidopsis thaliana
8.1e-21
103.6
521
24.2
Pp3c1_37590
Physcomitrella patens
8.1e-21
103.6
398
27.9
AT1G71870
Arabidopsis thaliana
6.9e-20
100.5
400
26.2
AT2G04040
Arabidopsis thaliana
9.0e-20
100.1
422
24.9
Pp3c5_21630
Physcomitrella patens
5.8e-19
97.4
389
27.0
AT2G04050
Arabidopsis thaliana
7.6e-19
97.1
422
24.4
Ec-23_000920
Ectocarpus siliculosus
1.7e-18
95.9
399
27.3
AT1G58340
Arabidopsis thaliana
6.4e-18
94.0
391
25.8
AT1G71140
Arabidopsis thaliana
8.4e-18
93.6
422
24.2
Pp3c17_22040
Physcomitrella patens
8.4e-18
93.6
404
26.7
Pp3c2_12080
Physcomitrella patens
8.4e-18
93.6
548
24.3
Pp3c6_11630
Physcomitrella patens
2.4e-17
92.0
392
26.3
AT2G04100
Arabidopsis thaliana
1.2e-16
89.7
416
23.6
AT4G29140
Arabidopsis thaliana
1.2e-16
89.7
390
25.1
Cre01.g014150
Chlamydomonas reinhardtii
1.2e-16
89.7
378
25.9
ENSG00000142494
Homo sapiens
1.6e-16
89.4
402
24.9
AT2G04090
Arabidopsis thaliana
2.1e-16
89.0
411
22.9
Pp3c14_23000
Physcomitrella patens
2.1e-16
89.0
405
25.2
Cre10.g444900
Chlamydomonas reinhardtii
2.7e-16
88.6
398
25.4
AA0058G00220
Aureococcus anophagefferens
3.5e-16
88.2
408
25.0
Pp3c10_10570
Physcomitrella patens
1.3e-15
86.3
405
24.7
AT2G04070
Arabidopsis thaliana
3.0e-15
85.1
415
24.6
gsu135060
Galdieria sulphuraria
5.1e-15
84.3
349
26.9
Cre01.g027764
Chlamydomonas reinhardtii
1.1e-14
83.2
559
22.9
Cre03.g205850
Chlamydomonas reinhardtii
2.8e-13
78.6
249
27.3
AT2G38510
Arabidopsis thaliana
3.6e-13
78.2
398
24.9
Cre10.g445850
Chlamydomonas reinhardtii
3.6e-13
78.2
385
26.8
emh446400
Emiliania huxleyi
3.6e-13
78.2
371
27.5
emh230720
Emiliania huxleyi
3.6e-13
78.2
371
27.5
SPCC4B3.13
Schizosaccharomyces pombe
3.6e-13
78.2
337
25.5
ENSG00000180638
Homo sapiens
4.8e-13
77.8
428
23.8
CC00G60790
Cyclotella cryptica
1.4e-12
76.3
415
23.9
Pp3c10_17490
Physcomitrella patens
2.4e-12
75.5
381
25.5
Cre01.g051211
Chlamydomonas reinhardtii
4.0e-12
74.7
524
23.1
tho117820
Thalassiosira oceanica
4.0e-12
74.7
230
28.7
tho486100
Thalassiosira oceanica
4.0e-12
74.7
252
26.2
SPAC323.07c
Schizosaccharomyces pombe
5.3e-12
74.3
397
23.2
AT3G59030
Arabidopsis thaliana
9.0e-12
73.6
383
24.0
AT2G04066
Arabidopsis thaliana
2.6e-11
72.0
138
31.9
AT1G64820
Arabidopsis thaliana
4.5e-11
71.2
516
23.1
Cre14.g625350
Chlamydomonas reinhardtii
8.4e-10
67.0
374
24.3
fso169670
Fistulifera solaris
1.9e-09
65.9
250
26.0
tho01400
Thalassiosira oceanica
3.2e-09
65.1
204
27.5
AT5G10420
Arabidopsis thaliana
4.2e-09
64.7
418
22.7
CC00G114010
Cyclotella cryptica
5.4e-09
64.3
384
22.1
tho116900
Thalassiosira oceanica
5.4e-09
64.3
414
23.9
fso84030
Fistulifera solaris
7.1e-09
63.9
307
26.7
Cre12.g523250
Chlamydomonas reinhardtii
2.5e-06
55.5
356
24.7
emh543580
Emiliania huxleyi
3.3e-06
55.1
307
23.5
AA0006G00310
Aureococcus anophagefferens
4.3e-06
54.7
390
23.8
CC00G182610
Cyclotella cryptica
7.4e-06
53.9
242
22.7
YDR338C
Saccharomyces cerevisiae strain S288C
7.4e-06
53.9
345
22.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (5 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (22 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (1 genes)
Physcomitrella patens (9 genes)
Chlamydomonas reinhardtii (9 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing