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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho217020
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho217020
Thalassiosira oceanica
0.0e+00
2438.7
1334
100.0
tps130000
Thalassiosira pseudonana
7.7e-102
374.0
246
67.9
sya00G161050
Synedra acus
5.0e-101
371.3
314
54.1
fso77080
Fistulifera solaris
3.6e-99
365.2
325
50.5
fso160310
Fistulifera solaris
3.0e-98
362.1
320
53.1
ptri130290
Phaeodactylum tricornutum
1.1e-97
360.1
325
50.5
Sro968_g226070
Seminavis robusta
3.3e-97
358.6
318
52.8
ps00G33510
Pseudo-nitzschia multiseries
1.1e-95
353.6
246
61.4
Sro99_g050950
Seminavis robusta
1.4e-95
353.2
243
61.3
fso191720
Fistulifera solaris
4.5e-94
348.2
355
49.9
fso77050
Fistulifera solaris
5.9e-94
347.8
355
49.6
gene16313
Fragilariopsis cylindrus
8.5e-93
344.0
242
59.9
tps142420
Thalassiosira pseudonana
4.5e-78
295.0
239
53.6
ptri72160
Phaeodactylum tricornutum
1.7e-77
293.1
356
42.7
tps193950
Thalassiosira pseudonana
1.8e-74
283.1
239
53.6
Sro70_g039030
Seminavis robusta
2.3e-74
282.7
375
40.3
sya00G196410
Synedra acus
1.7e-72
276.6
274
46.7
fso64760
Fistulifera solaris
1.1e-71
273.9
376
40.4
fso43770
Fistulifera solaris
7.0e-71
271.2
370
40.3
fso199510
Fistulifera solaris
2.7e-70
269.2
421
36.1
ptri69840
Phaeodactylum tricornutum
5.0e-69
265.0
284
42.3
CC00G149660
Cyclotella cryptica
1.1e-68
263.8
298
43.0
fso73640
Fistulifera solaris
1.5e-68
263.5
280
43.2
ps00G65070
Pseudo-nitzschia multiseries
1.5e-68
263.5
284
45.4
gene18213
Fragilariopsis cylindrus
8.9e-66
254.2
275
43.6
CC00G122160
Cyclotella cryptica
2.6e-65
252.7
337
42.4
Sro695_g188680
Seminavis robusta
1.3e-64
250.4
251
47.4
CC00G69060
Cyclotella cryptica
3.5e-62
242.3
211
57.3
sya00G00440
Synedra acus
2.1e-46
189.9
161
47.8
ENSG00000163743
Homo sapiens
3.6e-43
179.1
227
36.6
FBgn0031816
Drosophila melanogaster
7.6e-41
171.4
240
35.4
Cre17.g718300
Chlamydomonas reinhardtii
1.7e-40
170.2
248
41.9
Cre05.g248550
Chlamydomonas reinhardtii
8.4e-40
167.9
247
38.5
CM13G01410
Cyanidioschyzon merolae
2.4e-39
166.4
260
37.7
Naga_100090g9
Nannochloropsis gaditana
7.8e-38
161.4
297
36.0
Pp3c10_4820
Physcomitrella patens
1.2e-35
154.1
267
37.1
CC00G86210
Cyclotella cryptica
1.6e-35
153.7
253
33.6
AT3G62970
Arabidopsis thaliana
2.1e-35
153.3
273
35.2
Pp3c11_6970
Physcomitrella patens
1.4e-34
150.6
288
34.4
Pp3c14_5600
Physcomitrella patens
1.8e-34
150.2
251
36.7
Sro9_g007140
Seminavis robusta
3.1e-34
149.4
138
47.8
ccr65580
Chondrus crispus
5.2e-34
148.7
257
33.5
AT3G18290
Arabidopsis thaliana
4.4e-33
145.6
257
31.9
AT5G22920
Arabidopsis thaliana
9.9e-33
144.4
258
35.3
Pp3c1_6070
Physcomitrella patens
1.3e-32
144.1
252
36.5
tho328140
Thalassiosira oceanica
1.3e-32
144.1
384
29.7
fso155640
Fistulifera solaris
2.9e-32
142.9
271
32.1
sya00G162130
Synedra acus
6.4e-32
141.7
377
27.9
Pp3c2_31820
Physcomitrella patens
8.4e-32
141.4
252
36.1
AT1G74770
Arabidopsis thaliana
1.4e-31
140.6
254
31.9
SPAC2F3.16
Schizosaccharomyces pombe
1.4e-31
140.6
265
29.8
Ec-26_004520
Ectocarpus siliculosus
1.3e-29
134.0
286
32.2
tps146910
Thalassiosira pseudonana
1.3e-29
134.0
217
34.1
AT1G18910
Arabidopsis thaliana
1.7e-29
133.7
273
31.1
gsu76240
Galdieria sulphuraria
3.9e-29
132.5
348
31.0
ps00G05920
Pseudo-nitzschia multiseries
5.6e-28
128.6
294
31.0
Pp3c25_14501
Physcomitrella patens
2.8e-27
126.3
341
28.4
Pp3c25_14500
Physcomitrella patens
2.8e-27
126.3
341
28.4
AT5G18650
Arabidopsis thaliana
1.1e-26
124.4
251
31.5
Pp3c6_1960
Physcomitrella patens
1.1e-26
124.4
335
28.7
ccr161060
Chondrus crispus
9.0e-26
121.3
327
30.0
AT5G25560
Arabidopsis thaliana
2.2e-24
116.7
239
33.5
fso150310
Fistulifera solaris
6.4e-24
115.2
213
31.5
tho87860
Thalassiosira oceanica
4.2e-23
112.5
229
34.5
pte443830
Paramecium tetraurelia
3.5e-22
109.4
247
34.0
tps08780
Thalassiosira pseudonana
4.3e-20
102.4
327
27.2
pte760660
Paramecium tetraurelia
2.1e-19
100.1
247
32.8
PSNMU-V1.4_AUG-EV-PASAV3_0108560
Pseudo-nitzschia multistriata
4.0e-18
95.9
129
37.2
gene11141
Fragilariopsis cylindrus
7.6e-17
91.7
174
33.3
ccr143140
Chondrus crispus
5.8e-09
65.5
183
27.9
CC00G93640
Cyclotella cryptica
4.9e-08
62.4
266
25.6
Sro345_g122370
Seminavis robusta
4.2e-07
59.3
108
27.8
CC00G11650
Cyclotella cryptica
1.6e-06
57.4
164
28.7
CC00G85450
Cyclotella cryptica
2.7e-06
56.6
32
59.4
Sro9_g007130
Seminavis robusta
7.9e-06
55.1
66
42.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (5 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (10 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (7 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (3 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (7 genes)
Synedra acus (4 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing