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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho150100
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho150100
Thalassiosira oceanica
0.0e+00
1231.9
629
100.0
tps205230
Thalassiosira pseudonana
5.8e-185
649.0
633
51.5
CC00G33790
Cyclotella cryptica
3.1e-170
600.1
634
49.7
tho126780
Thalassiosira oceanica
4.9e-123
443.4
550
43.6
tho590620
Thalassiosira oceanica
1.3e-72
275.8
246
55.3
CC00G47860
Cyclotella cryptica
1.6e-65
252.3
223
52.0
ccr56620
Chondrus crispus
1.8e-53
212.2
596
28.0
CC00G47850
Cyclotella cryptica
6.3e-46
187.2
232
44.4
CC00G33780
Cyclotella cryptica
2.9e-43
178.3
187
48.1
Naga_100076g12
Nannochloropsis gaditana
2.8e-14
82.0
472
21.4
pte309560
Paramecium tetraurelia
1.0e-11
73.6
493
21.3
AA0010G02330
Aureococcus anophagefferens
1.3e-11
73.2
133
31.6
Pp3c25_9740
Physcomitrella patens
2.9e-11
72.0
463
21.8
AT1G79710
Arabidopsis thaliana
6.6e-11
70.9
275
26.2
AT5G10820
Arabidopsis thaliana
8.6e-11
70.5
186
26.3
AT5G25050
Arabidopsis thaliana
5.6e-10
67.8
454
23.8
ccr24800
Chondrus crispus
9.5e-10
67.0
436
21.1
Cre14.g615900
Chlamydomonas reinhardtii
9.5e-10
67.0
182
27.5
Pp3c1_14900
Physcomitrella patens
8.0e-09
63.9
181
26.5
CM14G03180
Cyanidioschyzon merolae
6.8e-08
60.8
489
22.1
AA0011G00190
Aureococcus anophagefferens
2.0e-07
59.3
184
26.1
Pp3c18_11000
Physcomitrella patens
5.7e-07
57.8
203
26.6
AT5G25040
Arabidopsis thaliana
2.9e-06
55.5
117
27.4
tps62480
Thalassiosira pseudonana
3.7e-06
55.1
181
23.8
PSNMU-V1.4_AUG-EV-PASAV3_0017470
Pseudo-nitzschia multistriata
8.3e-06
53.9
148
24.3
PSNMU-V1.4_AUG-EV-PASAV3_0074050
Pseudo-nitzschia multistriata
8.3e-06
53.9
148
24.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (4 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing