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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ptri97370
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ptri97370
Phaeodactylum tricornutum
0.0e+00
6194.8
3218
100.0
Sro397_g134430
Seminavis robusta
0.0e+00
3118.2
3162
55.2
fso117180
Fistulifera solaris
0.0e+00
3084.7
3220
53.4
fso50450
Fistulifera solaris
0.0e+00
3070.0
3212
53.1
ps00G39060
Pseudo-nitzschia multiseries
0.0e+00
2607.8
3098
48.4
CC00G17000
Cyclotella cryptica
0.0e+00
2187.9
3284
42.4
tps205130
Thalassiosira pseudonana
0.0e+00
2150.2
3271
42.0
sya00G187300
Synedra acus
0.0e+00
1980.3
2130
52.2
PSNMU-V1.4_AUG-EV-PASAV3_0065810
Pseudo-nitzschia multistriata
0.0e+00
1869.0
1985
54.2
Sro397_g134410
Seminavis robusta
0.0e+00
1600.1
1829
51.0
tho145400
Thalassiosira oceanica
0.0e+00
1426.0
2053
43.1
sya00G61890
Synedra acus
2.1e-190
669.5
871
46.4
sya00G144450
Synedra acus
5.3e-173
611.7
856
44.2
gene6541
Fragilariopsis cylindrus
1.5e-95
354.4
283
64.0
Naga_100023g38
Nannochloropsis gaditana
7.5e-95
352.1
3046
23.4
Ec-21_002440
Ectocarpus siliculosus
1.6e-23
115.2
221
33.9
fso131290
Fistulifera solaris
1.6e-23
115.2
333
27.9
PSNMU-V1.4_AUG-EV-PASAV3_0044840
Pseudo-nitzschia multistriata
4.5e-23
113.6
87
50.6
gene16175
Fragilariopsis cylindrus
1.0e-22
112.5
82
52.4
gene4450
Fragilariopsis cylindrus
1.0e-22
112.5
82
52.4
Sro1087_g239810
Seminavis robusta
1.7e-22
111.7
91
50.5
Naga_100073g7
Nannochloropsis gaditana
3.8e-22
110.5
320
30.0
ptri57580
Phaeodactylum tricornutum
3.8e-22
110.5
614
23.8
Ec-11_002810
Ectocarpus siliculosus
1.1e-21
109.0
77
55.8
ps00G146680
Pseudo-nitzschia multiseries
1.9e-21
108.2
70
55.7
tps162180
Thalassiosira pseudonana
1.9e-21
108.2
73
57.5
fso22080
Fistulifera solaris
2.5e-21
107.8
341
27.0
ptri25880
Phaeodactylum tricornutum
9.4e-21
105.9
254
31.9
Sro430_g141370
Seminavis robusta
2.1e-20
104.8
72
55.6
sya00G39620
Synedra acus
6.1e-20
103.2
220
34.5
ptri06720
Phaeodactylum tricornutum
2.0e-18
98.2
67
67.2
ptri124760
Phaeodactylum tricornutum
2.0e-18
98.2
67
67.2
ccr96920
Chondrus crispus
2.6e-18
97.8
234
30.8
emh202550
Emiliania huxleyi
9.7e-18
95.9
90
45.6
emh05340
Emiliania huxleyi
9.7e-18
95.9
90
45.6
Cre02.g089237
Chlamydomonas reinhardtii
4.8e-17
93.6
96
43.8
ENSG00000159459
Homo sapiens
4.8e-17
93.6
70
51.4
Pp3c8_2940
Physcomitrella patens
4.8e-17
93.6
68
57.4
Pp3c8_2930
Physcomitrella patens
4.8e-17
93.6
68
57.4
gsu119960
Galdieria sulphuraria
8.2e-17
92.8
77
49.4
Pp3c3_24510
Physcomitrella patens
8.2e-17
92.8
71
53.5
CC00G109250
Cyclotella cryptica
1.8e-16
91.7
159
35.8
Pp3c10_20380
Physcomitrella patens
1.8e-16
91.7
71
52.1
tho406880
Thalassiosira oceanica
7.0e-16
89.7
233
31.8
ps00G146700
Pseudo-nitzschia multiseries
1.6e-15
88.6
97
45.4
AT5G02310
Arabidopsis thaliana
2.7e-15
87.8
69
50.7
Pp3c3_37220
Physcomitrella patens
2.7e-15
87.8
68
54.4
tho249240
Thalassiosira oceanica
2.7e-15
87.8
159
35.2
WBGene00016326
Caenorhabditis elegans
3.5e-15
87.4
162
33.3
SPAC15A10.11
Schizosaccharomyces pombe
5.9e-15
86.7
100
41.0
ENSG00000024048
Homo sapiens
7.7e-15
86.3
166
31.9
FBgn0030809
Drosophila melanogaster
6.5e-14
83.2
68
48.5
Pp3c17_2850
Physcomitrella patens
8.5e-14
82.8
164
33.5
Pp3c15_3560
Physcomitrella patens
8.5e-14
82.8
69
42.0
Pp3c9_4700
Physcomitrella patens
8.5e-14
82.8
69
44.9
Pp3c7_22570
Physcomitrella patens
7.2e-13
79.7
93
36.6
emh641100
Emiliania huxleyi
1.6e-12
78.6
157
35.0
emh55720
Emiliania huxleyi
1.4e-11
75.5
90
40.0
Pp3c2_29090
Physcomitrella patens
1.8e-11
75.1
69
40.6
SPBC19C7.02
Schizosaccharomyces pombe
5.2e-11
73.6
80
37.5
ENSG00000144357
Homo sapiens
6.8e-11
73.2
69
39.1
YGR184C
Saccharomyces cerevisiae strain S288C
6.3e-09
66.6
315
20.6
pte191380
Paramecium tetraurelia
1.0e-06
59.3
68
33.8
emh485450
Emiliania huxleyi
2.9e-06
57.8
140
28.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (5 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (3 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (2 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (5 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (4 genes)
Synedra acus (4 genes)
Physcomitrella patens (10 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing