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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ptri190980
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ptri190980
Phaeodactylum tricornutum
0.0e+00
2489.5
1292
100.0
fso07530
Fistulifera solaris
0.0e+00
1324.7
1305
57.0
fso52820
Fistulifera solaris
0.0e+00
1317.8
1297
56.9
ps00G03520
Pseudo-nitzschia multiseries
0.0e+00
1224.5
1319
55.0
gene5887
Fragilariopsis cylindrus
0.0e+00
1213.0
1217
56.5
PSNMU-V1.4_AUG-EV-PASAV3_0107620
Pseudo-nitzschia multistriata
0.0e+00
1210.3
1347
53.5
Sro1179_g249660
Seminavis robusta
0.0e+00
1090.9
1228
51.4
CC00G196250
Cyclotella cryptica
6.0e-285
982.2
1410
44.2
Sro609_g174910
Seminavis robusta
2.5e-150
535.0
765
44.4
tps152490
Thalassiosira pseudonana
9.1e-116
420.2
519
48.4
tho315160
Thalassiosira oceanica
6.3e-77
291.2
256
60.5
sya00G136010
Synedra acus
1.2e-59
233.8
280
48.9
Pp3c14_1240
Physcomitrella patens
1.1e-49
200.7
1044
24.4
AT1G12470
Arabidopsis thaliana
2.1e-48
196.4
1027
24.4
Naga_100161g6
Nannochloropsis gaditana
9.9e-38
161.0
786
24.6
ENSG00000104142
Homo sapiens
2.2e-37
159.8
1110
22.6
AA0030G00670
Aureococcus anophagefferens
6.0e-27
125.2
251
33.9
FBgn0000482
Drosophila melanogaster
8.7e-26
121.3
246
29.7
tho571020
Thalassiosira oceanica
1.1e-23
114.4
183
41.0
Cre07.g328550
Chlamydomonas reinhardtii
3.4e-22
109.4
641
25.0
tho621660
Thalassiosira oceanica
1.9e-20
103.6
141
44.7
tho659200
Thalassiosira oceanica
4.6e-19
99.0
178
37.1
AA0024G00930
Aureococcus anophagefferens
2.3e-18
96.7
242
29.8
Ec-04_003020
Ectocarpus siliculosus
9.6e-17
91.3
712
21.5
WBGene00021058
Caenorhabditis elegans
1.6e-11
73.9
304
22.0
gsu103090
Galdieria sulphuraria
2.7e-11
73.2
315
25.1
emh433920
Emiliania huxleyi
1.2e-06
57.8
373
24.4
pte383320
Paramecium tetraurelia
5.9e-06
55.5
167
24.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (2 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing