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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ptri15010
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ptri15010
Phaeodactylum tricornutum
0.0e+00
4695.6
2417
100.0
fso66600
Fistulifera solaris
0.0e+00
2836.2
2326
61.4
fso174830
Fistulifera solaris
0.0e+00
2821.2
2320
61.4
Sro1830_g300310
Seminavis robusta
0.0e+00
2813.5
2372
60.2
PSNMU-V1.4_AUG-EV-PASAV3_0016970
Pseudo-nitzschia multistriata
0.0e+00
2653.6
2356
57.3
gene20466
Fragilariopsis cylindrus
0.0e+00
2595.1
2291
57.9
ps00G22320
Pseudo-nitzschia multiseries
0.0e+00
2558.9
2221
58.2
sya00G103910
Synedra acus
0.0e+00
2527.3
2301
56.5
tps122870
Thalassiosira pseudonana
0.0e+00
2379.4
2276
54.7
Naga_100125g10
Nannochloropsis gaditana
0.0e+00
1670.2
2588
40.1
Ec-10_005070
Ectocarpus siliculosus
0.0e+00
1535.0
2572
37.9
Pp3c13_4500
Physcomitrella patens
0.0e+00
1472.6
2334
38.4
AT1G08260
Arabidopsis thaliana
0.0e+00
1408.7
2281
38.8
ENSG00000177084
Homo sapiens
0.0e+00
1408.7
2369
37.8
AA0058G00020
Aureococcus anophagefferens
0.0e+00
1380.5
2388
38.3
FBgn0264326
Drosophila melanogaster
0.0e+00
1367.8
2342
37.1
AT2G27120
Arabidopsis thaliana
0.0e+00
1349.3
2270
37.6
SPBC25H2.13c
Schizosaccharomyces pombe
0.0e+00
1344.3
2310
36.6
YNL262W
Saccharomyces cerevisiae strain S288C
0.0e+00
1315.8
2354
35.0
ccr171860
Chondrus crispus
0.0e+00
1255.7
2373
36.5
WBGene00009368
Caenorhabditis elegans
0.0e+00
1153.3
2330
33.9
CC00G60270
Cyclotella cryptica
0.0e+00
1132.5
1909
37.0
gsu133780
Galdieria sulphuraria
0.0e+00
1080.1
2003
35.1
pte125380
Paramecium tetraurelia
1.2e-299
1031.9
2344
30.5
Cre03.g179961
Chlamydomonas reinhardtii
3.5e-294
1013.8
2463
31.3
CM17G00980
Cyanidioschyzon merolae
5.0e-293
1010.0
1183
46.0
CC00G45670
Cyclotella cryptica
6.1e-206
720.7
512
69.1
CC00G142060
Cyclotella cryptica
3.8e-168
595.1
438
66.7
tho197820
Thalassiosira oceanica
7.1e-146
521.2
727
41.1
CC00G135150
Cyclotella cryptica
1.9e-138
496.5
520
51.9
tho409200
Thalassiosira oceanica
1.6e-102
377.1
453
43.5
CC00G120200
Cyclotella cryptica
2.1e-89
333.6
367
45.0
emh452610
Emiliania huxleyi
8.6e-51
205.3
1339
23.9
emh122000
Emiliania huxleyi
1.1e-16
92.0
210
31.0
Ec-00_003210
Ectocarpus siliculosus
4.9e-14
83.2
144
34.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (5 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing