Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ptri130290
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ptri130290
Phaeodactylum tricornutum
1.0e-202
707.2
355
100.0
Sro968_g226070
Seminavis robusta
5.9e-158
558.5
295
83.7
fso77080
Fistulifera solaris
2.0e-150
533.5
315
75.6
fso191720
Fistulifera solaris
5.0e-149
528.9
320
76.9
fso77050
Fistulifera solaris
6.5e-149
528.5
320
77.2
Sro99_g050950
Seminavis robusta
2.0e-145
516.9
271
83.8
sya00G161050
Synedra acus
1.3e-144
514.2
289
78.2
fso160310
Fistulifera solaris
3.7e-144
512.7
310
73.9
gene16313
Fragilariopsis cylindrus
2.0e-142
506.9
287
79.4
ps00G33510
Pseudo-nitzschia multiseries
1.1e-135
484.6
290
75.5
tps130000
Thalassiosira pseudonana
2.3e-106
387.1
246
68.7
tho217020
Thalassiosira oceanica
1.8e-98
360.9
325
50.5
tps142420
Thalassiosira pseudonana
5.8e-81
302.8
240
52.9
tps193950
Thalassiosira pseudonana
7.6e-81
302.4
240
52.5
ptri72160
Phaeodactylum tricornutum
1.7e-80
301.2
360
41.1
sya00G196410
Synedra acus
1.7e-80
301.2
281
48.0
Sro70_g039030
Seminavis robusta
1.4e-79
298.1
381
38.1
fso199510
Fistulifera solaris
2.7e-78
293.9
284
44.7
ps00G65070
Pseudo-nitzschia multiseries
3.5e-78
293.5
288
46.2
ptri69840
Phaeodactylum tricornutum
6.6e-77
289.3
297
43.4
fso73640
Fistulifera solaris
3.3e-76
287.0
284
43.7
fso43770
Fistulifera solaris
9.6e-76
285.4
375
37.9
fso64760
Fistulifera solaris
1.2e-75
285.0
375
37.9
CC00G149660
Cyclotella cryptica
2.8e-75
283.9
330
40.9
gene18213
Fragilariopsis cylindrus
2.8e-75
283.9
282
43.6
CC00G122160
Cyclotella cryptica
3.2e-71
270.4
314
42.7
Sro695_g188680
Seminavis robusta
1.0e-69
265.4
257
45.5
CC00G69060
Cyclotella cryptica
4.8e-59
229.9
149
65.1
sya00G00440
Synedra acus
2.4e-55
217.6
173
50.9
ENSG00000163743
Homo sapiens
8.7e-53
209.1
226
40.7
FBgn0031816
Drosophila melanogaster
3.4e-49
197.2
239
38.9
CM13G01410
Cyanidioschyzon merolae
6.7e-45
183.0
246
38.2
Cre05.g248550
Chlamydomonas reinhardtii
1.5e-41
171.8
242
35.1
sya00G162130
Synedra acus
5.9e-41
169.9
253
36.8
AT1G74770
Arabidopsis thaliana
7.6e-41
169.5
242
35.5
fso155640
Fistulifera solaris
7.6e-41
169.5
251
35.9
Naga_100090g9
Nannochloropsis gaditana
3.8e-40
167.2
267
34.8
AT3G18290
Arabidopsis thaliana
6.5e-40
166.4
245
36.7
Sro9_g007140
Seminavis robusta
8.5e-40
166.0
141
48.9
CC00G86210
Cyclotella cryptica
2.5e-39
164.5
251
35.1
ccr65580
Chondrus crispus
3.2e-39
164.1
245
34.7
tho328140
Thalassiosira oceanica
2.7e-38
161.0
298
33.6
Cre17.g718300
Chlamydomonas reinhardtii
4.6e-38
160.2
245
34.7
AT3G62970
Arabidopsis thaliana
1.3e-37
158.7
243
33.3
AT1G18910
Arabidopsis thaliana
1.1e-36
155.6
304
31.2
PSNMU-V1.4_AUG-EV-PASAV3_0108560
Pseudo-nitzschia multistriata
5.7e-36
153.3
103
69.9
Pp3c10_4820
Physcomitrella patens
5.7e-36
153.3
244
32.4
ccr36960
Chondrus crispus
2.2e-35
151.4
325
30.8
Pp3c14_5600
Physcomitrella patens
2.2e-35
151.4
244
32.4
SPAC2F3.16
Schizosaccharomyces pombe
2.8e-35
151.0
245
31.8
Ec-26_004520
Ectocarpus siliculosus
6.3e-35
149.8
276
31.2
ps00G05920
Pseudo-nitzschia multiseries
1.1e-34
149.1
250
32.8
tps146910
Thalassiosira pseudonana
1.1e-34
149.1
213
36.6
ccr161060
Chondrus crispus
6.9e-34
146.4
313
29.7
Pp3c11_6970
Physcomitrella patens
9.1e-34
146.0
254
32.3
AT5G22920
Arabidopsis thaliana
1.0e-32
142.5
257
29.2
AT5G18650
Arabidopsis thaliana
2.2e-32
141.4
244
30.3
fso150310
Fistulifera solaris
1.9e-31
138.3
189
36.0
gsu76240
Galdieria sulphuraria
2.5e-31
137.9
249
30.5
Pp3c6_1960
Physcomitrella patens
3.6e-30
134.0
241
29.5
Pp3c1_6070
Physcomitrella patens
6.1e-30
133.3
291
28.5
Pp3c25_14501
Physcomitrella patens
7.9e-30
132.9
241
29.9
Pp3c25_14500
Physcomitrella patens
7.9e-30
132.9
241
29.9
Pp3c2_31820
Physcomitrella patens
1.0e-29
132.5
245
31.0
pte243060
Paramecium tetraurelia
1.0e-29
132.5
247
30.8
AT5G25560
Arabidopsis thaliana
4.4e-28
127.1
210
31.4
tho87860
Thalassiosira oceanica
3.1e-26
120.9
210
31.9
pte443830
Paramecium tetraurelia
3.8e-24
114.0
256
28.1
gene11141
Fragilariopsis cylindrus
4.2e-23
110.5
197
29.9
pte760660
Paramecium tetraurelia
2.0e-20
101.7
256
26.2
ccr27680
Chondrus crispus
4.5e-17
90.5
205
28.8
ccr143140
Chondrus crispus
4.7e-14
80.5
205
27.3
Sro345_g122370
Seminavis robusta
4.8e-11
70.5
112
32.1
Sro9_g007130
Seminavis robusta
3.8e-08
60.8
32
65.6
CC00G85450
Cyclotella cryptica
4.7e-06
53.9
46
50.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (4 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (10 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (5 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (5 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (7 genes)
Synedra acus (4 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing