Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ptri110440
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ptri110440
Phaeodactylum tricornutum
9.7e-117
421.0
237
100.0
gene15620
Fragilariopsis cylindrus
6.9e-38
159.1
108
65.7
Sro196_g083660
Seminavis robusta
4.5e-37
156.4
106
70.8
sya00G243310
Synedra acus
1.7e-36
154.5
109
65.1
sya00G192990
Synedra acus
2.2e-36
154.1
109
64.2
fso93680
Fistulifera solaris
8.4e-36
152.1
118
60.2
ps00G37350
Pseudo-nitzschia multiseries
7.1e-35
149.1
108
64.8
CC00G187920
Cyclotella cryptica
1.4e-30
134.8
118
55.1
tps77500
Thalassiosira pseudonana
1.8e-30
134.4
115
55.7
PSNMU-V1.4_AUG-EV-PASAV3_0036820
Pseudo-nitzschia multistriata
9.0e-30
132.1
122
52.5
AA0025G00160
Aureococcus anophagefferens
1.7e-28
127.9
118
50.0
Naga_100218g6
Nannochloropsis gaditana
1.1e-27
125.2
108
50.0
tho339780
Thalassiosira oceanica
1.4e-27
124.8
223
43.0
WBGene00021901
Caenorhabditis elegans
9.3e-27
122.1
108
50.9
Cre02.g088800
Chlamydomonas reinhardtii
6.1e-26
119.4
111
49.5
FBgn0037342
Drosophila melanogaster
3.9e-25
116.7
104
51.0
ENSG00000126254
Homo sapiens
5.1e-25
116.3
104
51.0
Ec-23_000060
Ectocarpus siliculosus
7.4e-24
112.5
104
46.2
pte95410
Paramecium tetraurelia
1.7e-23
111.3
108
44.4
AT3G04500
Arabidopsis thaliana
2.2e-23
110.9
116
43.1
Pp3c23_14650
Physcomitrella patens
1.4e-22
108.2
118
41.5
ccr63040
Chondrus crispus
5.3e-22
106.3
103
47.6
emh689550
Emiliania huxleyi
9.1e-22
105.5
103
45.6
SPAC22E12.02
Schizosaccharomyces pombe
2.0e-21
104.4
111
47.7
gsu102530
Galdieria sulphuraria
5.0e-20
99.8
112
40.2
Pp3c4_13300
Physcomitrella patens
5.9e-13
76.3
79
46.8
Pp3c12_10960
Physcomitrella patens
7.7e-13
75.9
79
46.8
Pp3c12_10910
Physcomitrella patens
7.7e-13
75.9
79
46.8
AT1G47490
Arabidopsis thaliana
2.9e-12
73.9
76
48.7
AT1G47500
Arabidopsis thaliana
3.8e-12
73.6
76
48.7
AA0014G00190
Aureococcus anophagefferens
5.0e-12
73.2
78
46.2
AT3G19130
Arabidopsis thaliana
1.4e-11
71.6
76
43.4
AT1G49600
Arabidopsis thaliana
3.2e-11
70.5
76
44.7
AT1G11650
Arabidopsis thaliana
3.6e-10
67.0
82
43.9
WBGene00015943
Caenorhabditis elegans
3.6e-10
67.0
84
40.5
WBGene00007396
Caenorhabditis elegans
6.1e-10
66.2
87
37.9
FBgn0085391
Drosophila melanogaster
8.0e-10
65.9
93
43.0
AT1G17370
Arabidopsis thaliana
1.0e-09
65.5
86
41.9
AT4G27000
Arabidopsis thaliana
1.0e-09
65.5
72
44.4
AT3G14100
Arabidopsis thaliana
1.4e-09
65.1
86
41.9
AT5G54900
Arabidopsis thaliana
1.4e-09
65.1
76
43.4
AT5G19350
Arabidopsis thaliana
1.8e-09
64.7
94
37.2
ENSG00000180098
Homo sapiens
1.8e-09
64.7
77
46.8
Pp3c2_9144
Physcomitrella patens
2.3e-09
64.3
80
41.2
WBGene00012904
Caenorhabditis elegans
3.0e-09
63.9
84
38.1
YHR086W
Saccharomyces cerevisiae strain S288C
5.2e-09
63.2
88
35.2
ENSG00000151923
Homo sapiens
8.8e-09
62.4
86
37.2
ENSG00000116001
Homo sapiens
1.1e-08
62.0
97
35.1
Naga_100197g10
Nannochloropsis gaditana
1.1e-08
62.0
76
42.1
Pp3c2_9140
Physcomitrella patens
2.0e-08
61.2
86
38.4
AT1G54080
Arabidopsis thaliana
4.4e-08
60.1
89
39.3
SPBC23E6.01c
Schizosaccharomyces pombe
5.7e-08
59.7
77
36.4
Pp3c17_4050
Physcomitrella patens
1.7e-07
58.2
85
35.3
FBgn0031607
Drosophila melanogaster
2.8e-07
57.4
79
39.2
FBgn0005649
Drosophila melanogaster
2.8e-07
57.4
82
36.6
Pp3c12_1830
Physcomitrella patens
2.8e-07
57.4
85
35.3
AT2G23350
Arabidopsis thaliana
3.7e-07
57.0
86
32.6
emh254690
Emiliania huxleyi
4.8e-07
56.6
71
43.7
emh176020
Emiliania huxleyi
4.8e-07
56.6
71
43.7
pte503010
Paramecium tetraurelia
6.3e-07
56.2
85
32.9
pte673940
Paramecium tetraurelia
6.3e-07
56.2
85
32.9
CM10G02890
Cyanidioschyzon merolae
8.2e-07
55.8
88
33.0
YBR212W
Saccharomyces cerevisiae strain S288C
1.4e-06
55.1
93
32.3
AT4G13850
Arabidopsis thaliana
3.1e-06
53.9
109
31.2
ccr141280
Chondrus crispus
3.1e-06
53.9
84
34.5
Cre16.g652900
Chlamydomonas reinhardtii
3.1e-06
53.9
77
36.4
gene3265
Fragilariopsis cylindrus
3.1e-06
53.9
83
33.7
AA0039G00410
Aureococcus anophagefferens
4.1e-06
53.5
71
35.2
AT4G34110
Arabidopsis thaliana
4.1e-06
53.5
77
35.1
fso71060
Fistulifera solaris
4.1e-06
53.5
83
36.1
fso196640
Fistulifera solaris
4.1e-06
53.5
83
36.1
YNL016W
Saccharomyces cerevisiae strain S288C
4.1e-06
53.5
93
33.3
AA0001G00810
Aureococcus anophagefferens
5.3e-06
53.1
72
40.3
ps00G92900
Pseudo-nitzschia multiseries
5.3e-06
53.1
83
33.7
SPBC3B9.11c
Schizosaccharomyces pombe
5.3e-06
53.1
74
37.8
AT3G54770
Arabidopsis thaliana
7.0e-06
52.8
61
37.7
AT4G24770
Arabidopsis thaliana
7.0e-06
52.8
75
36.0
gene17512
Fragilariopsis cylindrus
7.0e-06
52.8
83
33.7
gsu38890
Galdieria sulphuraria
7.0e-06
52.8
81
34.6
Naga_100040g17
Nannochloropsis gaditana
7.0e-06
52.8
78
32.1
PSNMU-V1.4_AUG-EV-PASAV3_0099970
Pseudo-nitzschia multistriata
9.1e-06
52.4
83
33.7
sya00G42910
Synedra acus
9.1e-06
52.4
83
37.3
sya00G161770
Synedra acus
9.1e-06
52.4
71
33.8
sya00G253640
Synedra acus
9.1e-06
52.4
83
39.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (3 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (4 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (3 genes)
Homo sapiens (4 genes)
Drosophila melanogaster (4 genes)
Caenorhabditis elegans (4 genes)
Saccharomyces cerevisiae strain S288C (3 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (17 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (1 genes)
Synedra acus (5 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing