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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
pte54860
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
pte54860
Paramecium tetraurelia
2.6e-245
849.0
422
100.0
Pp3c16_12900
Physcomitrella patens
1.7e-50
201.8
323
37.8
AT4G27340
Arabidopsis thaliana
5.0e-47
190.3
316
36.4
FBgn0052281
Drosophila melanogaster
1.9e-46
188.3
311
36.0
ptri174860
Phaeodactylum tricornutum
5.5e-46
186.8
325
36.6
SPAPB18E9.01
Schizosaccharomyces pombe
1.5e-43
178.7
417
30.5
ccr183480
Chondrus crispus
3.7e-42
174.1
351
32.8
ENSG00000126814
Homo sapiens
1.8e-41
171.8
441
27.0
fso116410
Fistulifera solaris
2.4e-41
171.4
339
33.9
fso25570
Fistulifera solaris
5.9e-40
166.8
339
33.6
YHR070W
Saccharomyces cerevisiae strain S288C
5.9e-40
166.8
396
31.1
ps00G111410
Pseudo-nitzschia multiseries
7.7e-40
166.4
344
34.9
sya00G104300
Synedra acus
7.7e-40
166.4
363
32.8
tps57450
Thalassiosira pseudonana
1.3e-39
165.6
336
34.2
Naga_100030g10
Nannochloropsis gaditana
3.8e-39
164.1
398
31.2
gene4052
Fragilariopsis cylindrus
8.0e-37
156.4
368
32.1
Sro19_g013350
Seminavis robusta
2.3e-36
154.8
435
29.4
sya00G255010
Synedra acus
5.2e-36
153.7
259
36.3
gsu125890
Galdieria sulphuraria
3.3e-35
151.0
278
33.5
gsu125910
Galdieria sulphuraria
3.3e-35
151.0
278
33.5
Cre16.g672041
Chlamydomonas reinhardtii
4.4e-35
150.6
420
27.6
PSNMU-V1.4_AUG-EV-PASAV3_0117900
Pseudo-nitzschia multistriata
4.8e-34
147.1
368
31.8
CC00G32590
Cyclotella cryptica
1.8e-33
145.2
390
29.0
WBGene00194707
Caenorhabditis elegans
3.1e-33
144.4
377
31.6
Pp3c17_17170
Physcomitrella patens
9.1e-33
142.9
373
27.1
Sro1272_g258210
Seminavis robusta
2.7e-32
141.4
293
30.0
AT3G56120
Arabidopsis thaliana
3.5e-32
141.0
407
28.3
AA0008G00940
Aureococcus anophagefferens
1.3e-31
139.0
293
32.4
CM10G00810
Cyanidioschyzon merolae
1.3e-31
139.0
322
30.7
CC00G128890
Cyclotella cryptica
1.3e-31
139.0
305
29.5
CC00G170350
Cyclotella cryptica
1.3e-31
139.0
305
29.5
gene10592
Fragilariopsis cylindrus
5.0e-31
137.1
322
33.2
fso166510
Fistulifera solaris
1.5e-30
135.6
290
33.1
fso40760
Fistulifera solaris
3.2e-30
134.4
326
30.4
Naga_100111g6
Nannochloropsis gaditana
1.2e-29
132.5
197
36.5
ptri79800
Phaeodactylum tricornutum
6.1e-29
130.2
312
32.1
tps151870
Thalassiosira pseudonana
3.4e-27
124.4
284
31.3
gene2750
Fragilariopsis cylindrus
1.6e-24
115.5
176
39.2
gene3315
Fragilariopsis cylindrus
3.2e-22
107.8
194
34.5
Ec-24_003210
Ectocarpus siliculosus
7.2e-22
106.7
333
27.0
PSNMU-V1.4_AUG-EV-PASAV3_0054140
Pseudo-nitzschia multistriata
5.7e-19
97.1
252
28.2
emh449250
Emiliania huxleyi
2.0e-16
88.6
316
25.3
tho417520
Thalassiosira oceanica
3.8e-15
84.3
108
41.7
tho115660
Thalassiosira oceanica
9.5e-14
79.7
178
30.9
emh177680
Emiliania huxleyi
2.1e-13
78.6
292
24.7
ptri112240
Phaeodactylum tricornutum
1.0e-07
59.7
164
28.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (4 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (2 genes)
Synedra acus (2 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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