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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene4559
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene4559
Fragilariopsis cylindrus
2.3e-219
762.7
373
100.0
gene3850
Fragilariopsis cylindrus
5.9e-215
748.0
370
98.6
ps00G178350
Pseudo-nitzschia multiseries
1.3e-193
677.2
362
89.5
PSNMU-V1.4_AUG-EV-PASAV3_0020490
Pseudo-nitzschia multistriata
4.9e-193
675.2
362
89.2
fso31480
Fistulifera solaris
1.9e-165
583.6
362
76.0
fso118580
Fistulifera solaris
3.6e-164
579.3
362
75.7
ptri43650
Phaeodactylum tricornutum
6.8e-163
575.1
356
76.7
Sro493_g154120
Seminavis robusta
6.8e-163
575.1
356
76.7
sya00G46130
Synedra acus
7.1e-160
565.1
362
74.3
sya00G63770
Synedra acus
7.1e-160
565.1
362
74.3
tho98620
Thalassiosira oceanica
2.1e-156
553.5
380
72.4
CC00G101980
Cyclotella cryptica
9.9e-154
544.7
376
69.7
tps114570
Thalassiosira pseudonana
2.3e-134
480.3
359
66.9
Naga_100083g10
Nannochloropsis gaditana
8.4e-129
461.8
358
66.2
AA0066G00030
Aureococcus anophagefferens
3.1e-123
443.4
360
61.4
AA0020G01140
Aureococcus anophagefferens
9.0e-123
441.8
354
62.4
Ec-17_001430
Ectocarpus siliculosus
5.9e-122
439.1
356
60.1
emh649900
Emiliania huxleyi
9.1e-115
415.2
378
57.7
emh201340
Emiliania huxleyi
2.6e-114
413.7
378
57.4
Cre05.g238322
Chlamydomonas reinhardtii
1.1e-112
408.3
359
56.3
ccr98460
Chondrus crispus
9.4e-112
405.2
329
60.2
Pp3c13_12220
Physcomitrella patens
1.6e-111
404.4
370
56.5
CM02G00100
Cyanidioschyzon merolae
8.8e-110
398.7
368
57.6
gsu87890
Galdieria sulphuraria
9.1e-107
388.7
353
55.8
AT2G25840
Arabidopsis thaliana
3.2e-104
380.2
356
54.2
sya00G29180
Synedra acus
1.6e-74
281.6
348
45.4
pte402480
Paramecium tetraurelia
1.6e-71
271.6
357
42.0
FBgn0036763
Drosophila melanogaster
4.1e-67
256.9
380
39.7
SPAC3G9.13c
Schizosaccharomyces pombe
1.3e-65
251.9
370
39.7
ENSG00000116874
Homo sapiens
1.8e-62
241.5
355
38.3
YDR268W
Saccharomyces cerevisiae strain S288C
5.4e-59
229.9
369
37.9
WBGene00006946
Caenorhabditis elegans
3.5e-50
200.7
359
32.3
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (3 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing