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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene3270
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene3270
Fragilariopsis cylindrus
0.0e+00
1078.9
540
100.0
gene17516
Fragilariopsis cylindrus
5.6e-285
981.1
517
95.4
ps00G04660
Pseudo-nitzschia multiseries
1.7e-201
703.7
538
65.4
PSNMU-V1.4_AUG-EV-PASAV3_0100040
Pseudo-nitzschia multistriata
2.8e-119
430.6
319
66.5
Sro777_g201000
Seminavis robusta
8.7e-105
382.5
567
41.6
sya00G55890
Synedra acus
6.7e-89
329.7
538
40.0
fso120730
Fistulifera solaris
6.3e-87
323.2
542
38.4
fso29440
Fistulifera solaris
1.3e-84
315.5
539
38.2
CC00G138070
Cyclotella cryptica
1.4e-70
268.9
577
34.0
tps90360
Thalassiosira pseudonana
5.0e-68
260.4
550
34.7
tho09020
Thalassiosira oceanica
1.2e-66
255.8
553
36.2
ptri203410
Phaeodactylum tricornutum
5.8e-40
167.2
530
30.4
ptri203370
Phaeodactylum tricornutum
4.6e-37
157.5
406
33.3
Naga_100065g15
Nannochloropsis gaditana
1.6e-26
122.5
368
31.5
Ec-21_002710
Ectocarpus siliculosus
6.4e-07
57.4
66
45.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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