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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene2568
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene2568
Fragilariopsis cylindrus
1.7e-26
119.0
51
100.0
ps00G136730
Pseudo-nitzschia multiseries
2.0e-19
95.5
51
74.5
PSNMU-V1.4_AUG-EV-PASAV3_0001320
Pseudo-nitzschia multistriata
1.2e-16
86.3
51
62.7
gene11505
Fragilariopsis cylindrus
1.7e-13
75.9
51
54.9
CC00G116200
Cyclotella cryptica
2.2e-13
75.5
51
51.0
ps00G31530
Pseudo-nitzschia multiseries
8.2e-13
73.6
47
63.8
PSNMU-V1.4_AUG-EV-PASAV3_0006630
Pseudo-nitzschia multistriata
1.4e-12
72.8
45
62.2
tho257860
Thalassiosira oceanica
6.9e-12
70.5
45
55.6
tho336700
Thalassiosira oceanica
1.5e-11
69.3
45
55.6
Sro98_g050620
Seminavis robusta
5.9e-11
67.4
51
52.9
Sro995_g229110
Seminavis robusta
5.9e-11
67.4
51
43.1
Sro295_g110310
Seminavis robusta
7.7e-11
67.0
51
43.1
tps132520
Thalassiosira pseudonana
5.5e-09
60.8
51
47.1
AT5G58610
Arabidopsis thaliana
9.4e-09
60.1
46
50.0
Cre16.g694208
Chlamydomonas reinhardtii
1.6e-08
59.3
47
53.2
AT2G37520
Arabidopsis thaliana
4.7e-08
57.8
48
45.8
AT3G53680
Arabidopsis thaliana
4.7e-08
57.8
48
45.8
AA0021G01150
Aureococcus anophagefferens
1.4e-07
56.2
47
44.7
AA0004G01410
Aureococcus anophagefferens
2.3e-07
55.5
41
56.1
AT1G05380
Arabidopsis thaliana
2.3e-07
55.5
46
43.5
AT3G14980
Arabidopsis thaliana
3.0e-07
55.1
46
45.7
fso106920
Fistulifera solaris
5.2e-07
54.3
48
50.0
fso193920
Fistulifera solaris
5.2e-07
54.3
48
50.0
ps00G00390
Pseudo-nitzschia multiseries
5.2e-07
54.3
50
48.0
Pp3c4_29810
Physcomitrella patens
8.8e-07
53.5
49
49.0
AA0002G04180
Aureococcus anophagefferens
1.5e-06
52.8
49
46.9
ccr55880
Chondrus crispus
1.5e-06
52.8
47
48.9
Sro216_g089260
Seminavis robusta
1.5e-06
52.8
50
44.0
CM18G04720
Cyanidioschyzon merolae
2.0e-06
52.4
46
39.1
Ec-06_008460
Ectocarpus siliculosus
2.0e-06
52.4
46
43.5
Naga_100140g5
Nannochloropsis gaditana
3.3e-06
51.6
47
44.7
tps221230
Thalassiosira pseudonana
3.3e-06
51.6
46
43.5
AT2G36720
Arabidopsis thaliana
4.4e-06
51.2
46
45.7
pte742370
Paramecium tetraurelia
4.4e-06
51.2
46
45.7
gsu71730
Galdieria sulphuraria
5.7e-06
50.8
52
40.4
ptri232150
Phaeodactylum tricornutum
5.7e-06
50.8
46
43.5
gene14179
Fragilariopsis cylindrus
7.4e-06
50.4
46
45.7
tho206560
Thalassiosira oceanica
9.7e-06
50.1
48
43.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (4 genes)
Synedra acus (0 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing