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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene15161
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene15161
Fragilariopsis cylindrus
2.4e-208
726.1
410
100.0
ptri14070
Phaeodactylum tricornutum
2.8e-103
377.1
279
65.6
ps00G183150
Pseudo-nitzschia multiseries
4.2e-99
363.2
279
62.0
PSNMU-V1.4_AUG-EV-PASAV3_0066150
Pseudo-nitzschia multistriata
1.2e-98
361.7
279
60.9
CC00G170710
Cyclotella cryptica
3.0e-89
330.5
273
55.3
Sro180_g078780
Seminavis robusta
7.1e-83
309.3
238
63.9
sya00G222510
Synedra acus
3.5e-82
307.0
290
53.4
tho02820
Thalassiosira oceanica
6.3e-79
296.2
282
51.1
AA0019G00840
Aureococcus anophagefferens
3.5e-37
157.5
282
37.9
emh389950
Emiliania huxleyi
1.2e-32
142.5
253
36.0
emh235410
Emiliania huxleyi
1.2e-32
142.5
253
36.0
PSNMU-V1.4_AUG-EV-PASAV3_0082100
Pseudo-nitzschia multistriata
1.1e-14
82.8
59
72.9
Sro546_g164110
Seminavis robusta
3.2e-14
81.3
75
60.0
gene16891
Fragilariopsis cylindrus
2.1e-13
78.6
56
73.2
tho152880
Thalassiosira oceanica
3.5e-13
77.8
55
72.7
gene3641
Fragilariopsis cylindrus
1.7e-12
75.5
56
67.9
gene4602
Fragilariopsis cylindrus
1.7e-12
75.5
56
67.9
ps00G169030
Pseudo-nitzschia multiseries
5.1e-12
73.9
53
71.7
tho137820
Thalassiosira oceanica
9.5e-11
69.7
53
67.9
Sro19_g013620
Seminavis robusta
2.1e-10
68.6
52
69.2
tps228270
Thalassiosira pseudonana
4.7e-10
67.4
39
82.1
PSNMU-V1.4_AUG-EV-PASAV3_0057420
Pseudo-nitzschia multistriata
1.1e-09
66.2
55
60.0
tps227200
Thalassiosira pseudonana
1.8e-09
65.5
42
76.2
ps00G86620
Pseudo-nitzschia multiseries
3.1e-09
64.7
55
63.6
CC00G53010
Cyclotella cryptica
6.8e-09
63.5
39
79.5
Ec-11_003170
Ectocarpus siliculosus
8.9e-09
63.2
37
78.4
Ec-11_005770
Ectocarpus siliculosus
3.2e-06
54.7
36
72.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (4 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (3 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (3 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing