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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene14800
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene14800
Fragilariopsis cylindrus
0.0e+00
1207.6
677
100.0
PSNMU-V1.4_AUG-EV-PASAV3_0030360
Pseudo-nitzschia multistriata
2.5e-173
610.5
635
53.7
ps00G29420
Pseudo-nitzschia multiseries
9.4e-173
608.6
635
53.5
Sro1369_g266930
Seminavis robusta
2.8e-92
341.3
650
37.8
CC00G46510
Cyclotella cryptica
2.0e-82
308.5
696
34.2
fso31390
Fistulifera solaris
2.2e-65
251.9
624
33.2
tho22100
Thalassiosira oceanica
2.9e-65
251.5
638
32.6
fso118670
Fistulifera solaris
7.2e-64
246.9
619
33.1
sya00G67070
Synedra acus
7.5e-29
130.6
226
41.2
Pp3c10_8190
Physcomitrella patens
9.5e-24
113.6
494
27.3
AT1G11880
Arabidopsis thaliana
5.4e-19
97.8
563
24.2
ENSG00000060642
Homo sapiens
2.0e-13
79.3
517
24.6
FBgn0265174
Drosophila melanogaster
9.9e-13
77.0
371
26.1
Ec-17_003500
Ectocarpus siliculosus
7.1e-11
70.9
603
21.7
SPAC18B11.05
Schizosaccharomyces pombe
4.3e-08
61.6
382
22.5
Cre07.g320650
Chlamydomonas reinhardtii
6.2e-07
57.8
60
46.7
YBR004C
Saccharomyces cerevisiae strain S288C
5.2e-06
54.7
93
36.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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