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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene13284
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene13284
Fragilariopsis cylindrus
3.2e-310
1065.4
765
100.0
PSNMU-V1.4_AUG-EV-PASAV3_0005430
Pseudo-nitzschia multistriata
1.3e-138
495.4
621
47.2
sya00G73700
Synedra acus
6.6e-74
280.4
473
36.8
fso150710
Fistulifera solaris
6.4e-69
263.8
471
34.4
fso192300
Fistulifera solaris
2.3e-66
255.4
466
34.3
ptri33350
Phaeodactylum tricornutum
1.3e-61
239.6
469
32.8
sya00G136470
Synedra acus
4.9e-61
237.7
466
30.9
fso55160
Fistulifera solaris
3.7e-56
221.5
454
33.3
ptri53350
Phaeodactylum tricornutum
3.7e-56
221.5
462
32.9
fso55100
Fistulifera solaris
8.1e-56
220.3
451
30.6
fso05670
Fistulifera solaris
4.0e-55
218.0
451
30.2
fso05610
Fistulifera solaris
2.6e-54
215.3
454
32.4
ps00G149460
Pseudo-nitzschia multiseries
8.7e-42
173.7
143
59.4
ps00G114460
Pseudo-nitzschia multiseries
1.5e-33
146.4
491
26.1
sya00G129820
Synedra acus
2.4e-31
139.0
455
28.8
sya00G136490
Synedra acus
9.1e-31
137.1
259
33.2
sya00G231010
Synedra acus
1.2e-30
136.7
456
28.5
sya00G235620
Synedra acus
1.5e-30
136.3
456
28.3
Sro93_g048600
Seminavis robusta
4.2e-28
128.3
473
29.4
CC00G70050
Cyclotella cryptica
7.2e-28
127.5
454
25.1
sya00G152200
Synedra acus
3.6e-27
125.2
295
32.2
ptri26850
Phaeodactylum tricornutum
2.2e-24
115.9
239
33.1
Sro1331_g263520
Seminavis robusta
6.7e-18
94.4
281
29.9
Naga_100091g15
Nannochloropsis gaditana
4.1e-07
58.5
250
25.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (7 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing