Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene11698
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene11698
Fragilariopsis cylindrus
0.0e+00
2099.3
1286
100.0
gene1987
Fragilariopsis cylindrus
1.1e-217
758.8
1275
42.2
PSNMU-V1.4_AUG-EV-PASAV3_0059860
Pseudo-nitzschia multistriata
1.8e-193
678.3
1290
36.8
ps00G128840
Pseudo-nitzschia multiseries
6.1e-189
663.3
1242
36.1
PSNMU-V1.4_AUG-EV-PASAV3_0072570
Pseudo-nitzschia multistriata
5.2e-188
660.2
1290
35.3
ps00G18670
Pseudo-nitzschia multiseries
1.1e-158
562.8
1333
35.0
gene9890
Fragilariopsis cylindrus
3.4e-115
418.3
1450
27.9
ps00G102040
Pseudo-nitzschia multiseries
7.6e-107
390.6
1210
29.7
gene18722
Fragilariopsis cylindrus
3.6e-104
381.7
1189
28.5
ps00G132350
Pseudo-nitzschia multiseries
2.4e-100
369.0
1275
26.6
gene6389
Fragilariopsis cylindrus
1.0e-79
300.4
1298
24.7
Sro12_g009430
Seminavis robusta
8.8e-71
270.8
1296
24.2
tps150850
Thalassiosira pseudonana
7.5e-70
267.7
1365
24.5
PSNMU-V1.4_AUG-EV-PASAV3_0060060
Pseudo-nitzschia multistriata
6.3e-69
264.6
1026
25.2
CC00G110790
Cyclotella cryptica
3.1e-68
262.3
1369
23.5
ps00G170730
Pseudo-nitzschia multiseries
2.3e-66
256.1
459
35.7
ptri106600
Phaeodactylum tricornutum
2.1e-64
249.6
1304
23.7
PSNMU-V1.4_AUG-EV-PASAV3_0074650
Pseudo-nitzschia multistriata
1.5e-62
243.4
1271
23.0
sya00G231810
Synedra acus
1.4e-60
236.9
469
32.6
gene4795
Fragilariopsis cylindrus
3.1e-60
235.7
432
35.2
Sro12_g009390
Seminavis robusta
3.1e-60
235.7
1290
22.9
fso71210
Fistulifera solaris
2.7e-59
232.6
1218
22.5
Sro83_g044150
Seminavis robusta
8.6e-58
227.6
1407
23.9
ps00G65590
Pseudo-nitzschia multiseries
1.2e-56
223.8
1480
21.6
fso196510
Fistulifera solaris
2.6e-54
216.1
1228
22.6
tho160200
Thalassiosira oceanica
4.6e-51
205.3
1176
22.0
gene20994
Fragilariopsis cylindrus
3.9e-42
175.6
215
47.0
PSNMU-V1.4_AUG-EV-PASAV3_0020280
Pseudo-nitzschia multistriata
7.3e-25
118.2
188
39.4
gene4796
Fragilariopsis cylindrus
8.1e-16
88.2
212
32.5
PSNMU-V1.4_AUG-EV-PASAV3_0020270
Pseudo-nitzschia multistriata
1.6e-11
73.9
94
41.5
gene3587
Fragilariopsis cylindrus
3.0e-10
69.7
94
39.4
AT4G22120
Arabidopsis thaliana
2.6e-06
56.6
341
21.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (6 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (9 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (3 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (6 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing