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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ccr56620
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ccr56620
Chondrus crispus
0.0e+00
1144.4
580
100.0
tps205230
Thalassiosira pseudonana
2.9e-61
238.0
543
31.3
CC00G33790
Cyclotella cryptica
1.5e-57
225.7
533
29.3
tho150100
Thalassiosira oceanica
1.3e-53
212.6
596
28.0
Naga_100076g12
Nannochloropsis gaditana
5.1e-42
174.1
519
26.2
tho126780
Thalassiosira oceanica
1.9e-36
155.6
549
25.1
AT5G25050
Arabidopsis thaliana
2.1e-27
125.6
500
25.2
AT1G79710
Arabidopsis thaliana
3.9e-26
121.3
498
25.7
CC00G47860
Cyclotella cryptica
1.5e-25
119.4
213
31.9
Pp3c22_1880
Physcomitrella patens
1.3e-24
116.3
442
25.3
Pp3c19_4580
Physcomitrella patens
2.1e-24
115.5
440
25.0
AA0010G02330
Aureococcus anophagefferens
2.4e-23
112.1
402
26.6
CM14G03180
Cyanidioschyzon merolae
2.4e-23
112.1
449
25.4
pte309560
Paramecium tetraurelia
3.1e-23
111.7
472
26.3
AT5G25040
Arabidopsis thaliana
3.4e-22
108.2
540
23.1
AT2G32040
Arabidopsis thaliana
1.3e-21
106.3
435
25.5
Ec-02_005800
Ectocarpus siliculosus
4.9e-21
104.4
430
25.8
emh565100
Emiliania huxleyi
8.4e-21
103.6
448
27.7
Pp3c25_9740
Physcomitrella patens
1.9e-20
102.4
478
25.7
tps62480
Thalassiosira pseudonana
2.4e-20
102.1
430
24.9
ccr24800
Chondrus crispus
3.5e-19
98.2
440
24.1
AT5G10820
Arabidopsis thaliana
6.0e-19
97.4
482
25.1
sya00G252880
Synedra acus
6.0e-19
97.4
434
24.4
PSNMU-V1.4_AUG-EV-PASAV3_0074050
Pseudo-nitzschia multistriata
1.8e-18
95.9
425
24.7
emh540610
Emiliania huxleyi
3.9e-18
94.7
490
23.9
CC00G47850
Cyclotella cryptica
1.1e-17
93.2
205
31.2
PSNMU-V1.4_AUG-EV-PASAV3_0017470
Pseudo-nitzschia multistriata
1.1e-17
93.2
425
24.2
gene8206
Fragilariopsis cylindrus
1.9e-17
92.4
442
22.9
Pp3c10_2680
Physcomitrella patens
3.3e-17
91.7
462
23.4
pte470920
Paramecium tetraurelia
7.4e-17
90.5
452
25.2
pte544980
Paramecium tetraurelia
1.3e-16
89.7
439
25.3
fso39460
Fistulifera solaris
3.7e-16
88.2
426
24.9
fso109370
Fistulifera solaris
4.8e-16
87.8
432
24.1
ps00G72050
Pseudo-nitzschia multiseries
8.2e-16
87.0
430
23.5
Naga_100005g53
Nannochloropsis gaditana
1.1e-15
86.7
423
25.1
pte563920
Paramecium tetraurelia
1.1e-15
86.7
417
24.0
pte571930
Paramecium tetraurelia
1.1e-15
86.7
417
23.7
emh496500
Emiliania huxleyi
1.4e-15
86.3
450
24.4
Pp3c1_36490
Physcomitrella patens
3.1e-15
85.1
499
24.4
Pp3c18_11000
Physcomitrella patens
4.0e-15
84.7
458
24.0
pte581520
Paramecium tetraurelia
4.0e-15
84.7
472
23.3
Cre14.g615900
Chlamydomonas reinhardtii
6.9e-15
84.0
186
34.4
gene3152
Fragilariopsis cylindrus
6.9e-15
84.0
441
21.5
AT5G54860
Arabidopsis thaliana
1.2e-14
83.2
480
23.5
ptri76260
Phaeodactylum tricornutum
2.6e-14
82.0
425
23.8
CC00G33780
Cyclotella cryptica
5.8e-14
80.9
146
34.2
pte495010
Paramecium tetraurelia
7.6e-14
80.5
140
37.1
pte555540
Paramecium tetraurelia
1.0e-13
80.1
528
23.3
pte496580
Paramecium tetraurelia
1.7e-13
79.3
490
21.2
Pp3c1_14900
Physcomitrella patens
2.2e-13
79.0
428
25.0
sya00G37910
Synedra acus
2.9e-13
78.6
482
23.7
CC00G177780
Cyclotella cryptica
3.8e-13
78.2
206
29.1
AA0011G00190
Aureococcus anophagefferens
4.2e-12
74.7
204
31.4
pte164090
Paramecium tetraurelia
9.3e-12
73.6
459
22.2
Sro1704_g292350
Seminavis robusta
1.6e-11
72.8
435
22.5
Sro1912_g304970
Seminavis robusta
2.1e-11
72.4
435
22.5
Cre03.g162450
Chlamydomonas reinhardtii
3.0e-10
68.6
507
22.3
fso138940
Fistulifera solaris
3.9e-10
68.2
187
28.3
fso164950
Fistulifera solaris
3.9e-10
68.2
187
28.3
Ec-10_000510
Ectocarpus siliculosus
7.4e-09
63.9
115
31.3
Cre06.g311000
Chlamydomonas reinhardtii
9.7e-09
63.5
174
33.3
tho590620
Thalassiosira oceanica
9.7e-09
63.5
165
27.3
Cre01.g007737
Chlamydomonas reinhardtii
1.6e-08
62.8
149
28.2
Naga_100007g116
Nannochloropsis gaditana
8.2e-08
60.5
393
22.4
Pp3c21_8500
Physcomitrella patens
8.2e-08
60.5
195
27.7
Naga_100040g39
Nannochloropsis gaditana
1.8e-07
59.3
127
26.0
Ec-04_002850
Ectocarpus siliculosus
4.1e-07
58.2
425
19.5
Naga_100074g5
Nannochloropsis gaditana
4.1e-07
58.2
452
22.3
AT2G33280
Arabidopsis thaliana
1.5e-06
56.2
411
22.9
AA0010G03100
Aureococcus anophagefferens
7.7e-06
53.9
484
21.3
AT1G64890
Arabidopsis thaliana
7.7e-06
53.9
428
20.8
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (4 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (5 genes)
Aureococcus anophagefferens (3 genes)
Ectocarpus siliculosus (3 genes)
Nannochloropsis gaditana (5 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (8 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (3 genes)
Paramecium tetraurelia (10 genes)
Seminavis robusta (2 genes)
Synedra acus (2 genes)
Physcomitrella patens (8 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing