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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
WBGene00000137
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
WBGene00000137
Caenorhabditis elegans
0.0e+00
1680.6
825
100.0
gsu121740
Galdieria sulphuraria
7.7e-60
233.8
607
29.8
CM15G01040
Cyanidioschyzon merolae
6.3e-54
214.2
569
28.5
FBgn0260397
Drosophila melanogaster
3.1e-53
211.8
677
27.0
ENSG00000004487
Homo sapiens
7.0e-53
210.7
664
26.7
AT3G13682
Arabidopsis thaliana
1.3e-51
206.5
548
30.1
AT1G62830
Arabidopsis thaliana
1.9e-50
202.6
566
28.8
Pp3c10_16040
Physcomitrella patens
5.5e-50
201.1
544
27.9
AT4G16310
Arabidopsis thaliana
3.6e-49
198.4
506
28.3
AT3G10390
Arabidopsis thaliana
5.2e-48
194.5
551
28.1
ccr81740
Chondrus crispus
5.2e-48
194.5
668
26.3
Pp3c14_17210
Physcomitrella patens
1.5e-47
193.0
544
27.8
ccr191780
Chondrus crispus
1.5e-42
176.4
541
27.2
Cre07.g318651
Chlamydomonas reinhardtii
2.3e-40
169.1
612
25.2
fso191050
Fistulifera solaris
5.7e-39
164.5
573
26.4
fso71680
Fistulifera solaris
4.8e-38
161.4
571
26.6
Pp3c1_1170
Physcomitrella patens
6.3e-38
161.0
560
25.2
Pp3c1_6380
Physcomitrella patens
3.1e-37
158.7
562
24.6
Pp3c1_6385
Physcomitrella patens
3.1e-37
158.7
562
24.6
ps00G52170
Pseudo-nitzschia multiseries
3.1e-37
158.7
513
26.9
AT2G43020
Arabidopsis thaliana
2.5e-34
149.1
467
28.3
gene1205
Fragilariopsis cylindrus
2.5e-34
149.1
471
27.0
Sro1581_g283780
Seminavis robusta
3.0e-32
142.1
577
24.8
AT3G59050
Arabidopsis thaliana
2.6e-31
139.0
466
29.0
ptri132410
Phaeodactylum tricornutum
2.6e-31
139.0
559
24.0
ptri181790
Phaeodactylum tricornutum
4.4e-31
138.3
570
24.4
AT1G65840
Arabidopsis thaliana
5.7e-31
137.9
463
26.8
sya00G12820
Synedra acus
9.1e-29
130.6
564
22.7
Pp3c9_8130
Physcomitrella patens
3.5e-28
128.6
460
26.3
Pp3c9_8100
Physcomitrella patens
3.5e-28
128.6
460
26.3
fso155420
Fistulifera solaris
1.0e-27
127.1
600
23.7
Pp3c15_18820
Physcomitrella patens
5.0e-27
124.8
458
24.7
fso150120
Fistulifera solaris
1.5e-26
123.2
607
24.1
WBGene00016061
Caenorhabditis elegans
7.2e-26
120.9
480
26.5
gsu72430
Galdieria sulphuraria
6.8e-24
114.4
501
24.0
Sro1832_g300430
Seminavis robusta
2.6e-23
112.5
528
23.9
WBGene00005010
Caenorhabditis elegans
5.7e-23
111.3
657
23.6
gene18307
Fragilariopsis cylindrus
9.8e-23
110.5
487
27.9
emh539350
Emiliania huxleyi
2.2e-22
109.4
308
30.2
tho100460
Thalassiosira oceanica
2.9e-22
109.0
493
25.2
FBgn0037606
Drosophila melanogaster
4.9e-22
108.2
582
23.2
FBgn0036749
Drosophila melanogaster
1.4e-21
106.7
495
25.1
Sro982_g227750
Seminavis robusta
1.4e-21
106.7
478
25.3
Sro2365_g325020
Seminavis robusta
1.8e-21
106.3
478
25.3
sya00G238230
Synedra acus
4.6e-20
101.7
487
24.4
Sro111_g055430
Seminavis robusta
5.9e-20
101.3
254
31.5
PSNMU-V1.4_AUG-EV-PASAV3_0059180
Pseudo-nitzschia multistriata
1.3e-19
100.1
341
25.8
ENSG00000088826
Homo sapiens
2.3e-19
99.4
494
23.1
Sro738_g195300
Seminavis robusta
2.3e-19
99.4
464
24.4
WBGene00011615
Caenorhabditis elegans
3.0e-19
99.0
638
23.8
WBGene00000139
Caenorhabditis elegans
5.0e-19
98.2
480
24.2
Ec-24_001850
Ectocarpus siliculosus
5.0e-19
98.2
210
34.3
tho135260
Thalassiosira oceanica
1.5e-18
96.7
475
25.9
FBgn0036750
Drosophila melanogaster
4.3e-18
95.1
486
23.9
gene15596
Fragilariopsis cylindrus
7.3e-18
94.4
483
23.4
Sro619_g176360
Seminavis robusta
9.5e-18
94.0
250
28.0
AT5G13700
Arabidopsis thaliana
1.2e-17
93.6
486
24.7
emh532160
Emiliania huxleyi
2.1e-17
92.8
300
25.3
Pp3c19_16810
Physcomitrella patens
4.7e-17
91.7
478
24.9
Cre10.g447767
Chlamydomonas reinhardtii
6.2e-17
91.3
523
23.5
PSNMU-V1.4_AUG-EV-PASAV3_0007610
Pseudo-nitzschia multistriata
6.2e-17
91.3
223
30.9
Cre09.g389250
Chlamydomonas reinhardtii
3.1e-16
89.0
483
21.7
PSNMU-V1.4_AUG-EV-PASAV3_0079500
Pseudo-nitzschia multistriata
4.0e-16
88.6
477
26.0
tho285040
Thalassiosira oceanica
4.0e-16
88.6
494
24.3
Sro1456_g274230
Seminavis robusta
6.8e-16
87.8
497
23.5
ENSG00000069535
Homo sapiens
1.5e-15
86.7
476
22.3
FBgn0033584
Drosophila melanogaster
2.6e-15
85.9
316
25.6
AA0006G03670
Aureococcus anophagefferens
7.5e-15
84.3
493
23.3
emh163540
Emiliania huxleyi
9.8e-15
84.0
146
35.6
FBgn0035943
Drosophila melanogaster
1.3e-14
83.6
502
23.9
tho162980
Thalassiosira oceanica
2.9e-14
82.4
510
23.9
emh408280
Emiliania huxleyi
1.4e-13
80.1
425
22.8
emh148220
Emiliania huxleyi
1.4e-13
80.1
425
22.8
tho251140
Thalassiosira oceanica
1.9e-13
79.7
491
23.6
ptri58240
Phaeodactylum tricornutum
2.4e-13
79.3
392
24.2
AA0005G05200
Aureococcus anophagefferens
3.2e-13
79.0
298
24.8
Sro654_g182120
Seminavis robusta
3.2e-13
79.0
209
26.3
ENSG00000189221
Homo sapiens
5.4e-13
78.2
486
21.6
tho216080
Thalassiosira oceanica
1.2e-12
77.0
478
23.4
tho412380
Thalassiosira oceanica
1.2e-12
77.0
475
22.7
gene8256
Fragilariopsis cylindrus
2.7e-12
75.9
238
27.3
tho198900
Thalassiosira oceanica
4.6e-12
75.1
481
23.9
tho443760
Thalassiosira oceanica
6.0e-12
74.7
520
23.7
Sro666_g183980
Seminavis robusta
1.0e-11
73.9
227
26.4
tho241420
Thalassiosira oceanica
2.3e-11
72.8
262
25.2
PSNMU-V1.4_AUG-EV-PASAV3_0032800
Pseudo-nitzschia multistriata
3.0e-11
72.4
264
28.0
pte428750
Paramecium tetraurelia
3.9e-11
72.0
470
22.6
PSNMU-V1.4_AUG-EV-PASAV3_0030440
Pseudo-nitzschia multistriata
4.3e-10
68.6
201
28.4
ps00G88080
Pseudo-nitzschia multiseries
9.5e-10
67.4
225
28.4
Pp3c2_35433
Physcomitrella patens
1.6e-09
66.6
110
32.7
CC00G91040
Cyclotella cryptica
2.8e-09
65.9
267
23.2
emh163520
Emiliania huxleyi
1.1e-08
63.9
150
28.7
Pp3c2_35420
Physcomitrella patens
1.1e-08
63.9
121
32.2
gene6120
Fragilariopsis cylindrus
6.8e-08
61.2
169
26.6
Ec-04_005780
Ectocarpus siliculosus
8.9e-08
60.8
364
23.1
SPBC146.09c
Schizosaccharomyces pombe
2.6e-07
59.3
236
24.6
tho542100
Thalassiosira oceanica
1.3e-06
57.0
231
24.2
Sro748_g196720
Seminavis robusta
2.9e-06
55.8
268
22.8
fso33040
Fistulifera solaris
3.7e-06
55.5
370
23.2
Sro913_g219440
Seminavis robusta
4.9e-06
55.1
196
23.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (11 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (5 genes)
Fragilariopsis cylindrus (5 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (2 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (4 genes)
Drosophila melanogaster (6 genes)
Caenorhabditis elegans (5 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (8 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (6 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (12 genes)
Synedra acus (2 genes)
Physcomitrella patens (11 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (5 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing