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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Sro42_g025490
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Sro42_g025490
Seminavis robusta
3.8e-64
245.4
122
100.0
Pp3c6_23240
Physcomitrella patens
7.0e-18
91.7
78
56.4
CC00G169110
Cyclotella cryptica
9.1e-18
91.3
104
48.1
Pp3c5_7920
Physcomitrella patens
1.6e-17
90.5
78
55.1
Pp3c5_6070
Physcomitrella patens
1.6e-17
90.5
78
55.1
sya00G55950
Synedra acus
1.0e-16
87.8
86
51.2
tps130240
Thalassiosira pseudonana
1.3e-16
87.4
75
57.3
Cre06.g268600
Chlamydomonas reinhardtii
3.8e-16
85.9
68
57.4
ptri59120
Phaeodactylum tricornutum
3.8e-16
85.9
109
45.9
AT4G38680
Arabidopsis thaliana
6.5e-16
85.1
75
54.7
ptri131910
Phaeodactylum tricornutum
1.1e-15
84.3
78
51.3
Sro2322_g323260
Seminavis robusta
1.1e-15
84.3
67
56.7
CC00G27610
Cyclotella cryptica
1.5e-15
84.0
71
57.7
AT2G21060
Arabidopsis thaliana
3.2e-15
82.8
75
52.0
emh663730
Emiliania huxleyi
9.4e-15
81.3
70
55.7
emh53840
Emiliania huxleyi
9.4e-15
81.3
70
55.7
AT2G17870
Arabidopsis thaliana
1.2e-14
80.9
67
55.2
Pp3c5_7880
Physcomitrella patens
3.6e-14
79.3
71
54.9
Sro79_g042740
Seminavis robusta
6.1e-14
78.6
107
43.9
gene16842
Fragilariopsis cylindrus
8.0e-14
78.2
72
55.6
tho165980
Thalassiosira oceanica
8.0e-14
78.2
104
43.3
ps00G159310
Pseudo-nitzschia multiseries
5.2e-13
75.5
68
54.4
tps147210
Thalassiosira pseudonana
2.6e-12
73.2
65
53.8
sya00G26520
Synedra acus
4.4e-12
72.4
70
48.6
tps80080
Thalassiosira pseudonana
4.4e-12
72.4
70
50.0
AA0009G00460
Aureococcus anophagefferens
1.3e-11
70.9
65
52.3
AT4G36020
Arabidopsis thaliana
1.3e-11
70.9
65
50.8
emh750730
Emiliania huxleyi
1.7e-11
70.5
110
41.8
Naga_100339g1
Nannochloropsis gaditana
2.2e-11
70.1
101
38.6
gene19974
Fragilariopsis cylindrus
6.3e-11
68.6
88
45.5
emh344660
Emiliania huxleyi
8.2e-11
68.2
72
48.6
ptri78140
Phaeodactylum tricornutum
1.4e-10
67.4
87
49.4
emh227240
Emiliania huxleyi
2.4e-10
66.6
56
53.6
Sro1732_g294180
Seminavis robusta
1.2e-09
64.3
78
44.9
fso79320
Fistulifera solaris
1.6e-09
63.9
85
45.9
fso162400
Fistulifera solaris
1.6e-09
63.9
85
45.9
Sro1493_g277300
Seminavis robusta
4.5e-09
62.4
76
50.0
ENSG00000060138
Homo sapiens
5.9e-09
62.0
74
45.9
tho385820
Thalassiosira oceanica
7.7e-09
61.6
66
48.5
WBGene00003014
Caenorhabditis elegans
2.9e-08
59.7
56
42.9
ps00G176840
Pseudo-nitzschia multiseries
2.9e-08
59.7
74
48.6
ENSG00000006047
Homo sapiens
5.0e-08
58.9
85
42.4
FBgn0022959
Drosophila melanogaster
8.5e-08
58.2
74
43.2
fso191190
Fistulifera solaris
8.5e-08
58.2
39
66.7
gene11268
Fragilariopsis cylindrus
1.5e-07
57.4
66
48.5
WBGene00000472
Caenorhabditis elegans
1.9e-07
57.0
75
44.0
PSNMU-V1.4_AUG-EV-PASAV3_0028820
Pseudo-nitzschia multistriata
2.5e-07
56.6
74
47.3
FBgn0035626
Drosophila melanogaster
3.2e-07
56.2
88
37.5
Pp3s42_344
Physcomitrella patens
4.2e-07
55.8
62
41.9
Pp3s42_340
Physcomitrella patens
4.2e-07
55.8
62
41.9
sya00G133980
Synedra acus
1.2e-06
54.3
55
49.1
tho478220
Thalassiosira oceanica
1.2e-06
54.3
73
46.6
tho555760
Thalassiosira oceanica
1.2e-06
54.3
73
46.6
sya00G264110
Synedra acus
1.6e-06
53.9
74
45.9
ps00G111300
Pseudo-nitzschia multiseries
2.7e-06
53.1
75
45.3
PSNMU-V1.4_AUG-EV-PASAV3_0012560
Pseudo-nitzschia multistriata
4.7e-06
52.4
76
46.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (3 genes)
Thalassiosira pseudonana (3 genes)
Thalassiosira oceanica (4 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (3 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (4 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (5 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (5 genes)
Synedra acus (4 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (2 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing