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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Sro345_g122370
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Sro345_g122370
Seminavis robusta
0.0e+00
1244.6
661
100.0
fso150310
Fistulifera solaris
4.9e-134
479.9
651
44.2
fso155640
Fistulifera solaris
6.4e-134
479.6
647
45.1
sya00G162130
Synedra acus
4.8e-129
463.4
682
43.3
ptri149450
Phaeodactylum tricornutum
1.3e-121
438.7
613
44.7
CC00G86210
Cyclotella cryptica
8.8e-107
389.4
715
39.4
tho87860
Thalassiosira oceanica
5.9e-103
376.7
651
39.0
tps146890
Thalassiosira pseudonana
2.0e-58
228.8
627
32.2
ps00G05920
Pseudo-nitzschia multiseries
5.2e-43
177.6
165
52.7
Naga_100090g9
Nannochloropsis gaditana
4.3e-37
157.9
638
26.6
Ec-26_004520
Ectocarpus siliculosus
2.4e-35
152.1
684
24.1
AT3G18290
Arabidopsis thaliana
1.3e-28
129.8
502
25.9
gsu76240
Galdieria sulphuraria
4.0e-27
124.8
525
25.1
AT1G18910
Arabidopsis thaliana
2.9e-25
118.6
469
23.7
Cre05.g248550
Chlamydomonas reinhardtii
6.4e-25
117.5
125
47.2
Pp3c25_14501
Physcomitrella patens
3.2e-24
115.2
433
24.0
Pp3c25_14500
Physcomitrella patens
3.2e-24
115.2
433
24.0
tps146910
Thalassiosira pseudonana
3.2e-24
115.2
79
58.2
Pp3c6_1960
Physcomitrella patens
7.1e-24
114.0
508
23.0
AT1G74770
Arabidopsis thaliana
1.6e-23
112.8
440
23.4
fso151710
Fistulifera solaris
1.6e-23
112.8
399
27.1
ccr161060
Chondrus crispus
5.6e-21
104.4
111
44.1
CM13G01410
Cyanidioschyzon merolae
3.6e-20
101.7
111
45.9
ccr36960
Chondrus crispus
7.1e-16
87.4
110
40.0
ccr65580
Chondrus crispus
1.6e-15
86.3
112
35.7
sya00G161050
Synedra acus
2.3e-14
82.4
105
38.1
pte760660
Paramecium tetraurelia
4.3e-13
78.2
96
41.7
fso77080
Fistulifera solaris
2.8e-12
75.5
124
32.3
pte443830
Paramecium tetraurelia
6.2e-12
74.3
92
39.1
SPAC2F3.16
Schizosaccharomyces pombe
8.1e-12
73.9
128
33.6
ps00G33510
Pseudo-nitzschia multiseries
1.4e-11
73.2
105
33.3
ENSG00000163743
Homo sapiens
1.8e-11
72.8
96
37.5
FBgn0031816
Drosophila melanogaster
2.4e-11
72.4
106
33.0
ptri130290
Phaeodactylum tricornutum
9.0e-11
70.5
112
32.1
pte243060
Paramecium tetraurelia
2.0e-10
69.3
92
39.1
fso77050
Fistulifera solaris
3.4e-10
68.6
112
32.1
fso191720
Fistulifera solaris
3.4e-10
68.6
112
32.1
gene11141
Fragilariopsis cylindrus
4.5e-10
68.2
47
55.3
Sro968_g226070
Seminavis robusta
7.6e-10
67.4
105
30.5
Sro99_g050950
Seminavis robusta
1.0e-09
67.0
105
32.4
fso160310
Fistulifera solaris
2.5e-08
62.4
119
29.4
Sro695_g188680
Seminavis robusta
2.5e-08
62.4
109
30.3
PSNMU-V1.4_AUG-EV-PASAV3_0089340
Pseudo-nitzschia multistriata
2.1e-07
59.3
36
72.2
tho217020
Thalassiosira oceanica
2.1e-07
59.3
108
27.8
AT5G22920
Arabidopsis thaliana
3.5e-07
58.5
91
33.0
AT5G25560
Arabidopsis thaliana
6.0e-07
57.8
91
33.0
Pp3c14_5600
Physcomitrella patens
6.0e-07
57.8
91
33.0
AT5G18650
Arabidopsis thaliana
1.8e-06
56.2
99
33.3
Cre17.g718300
Chlamydomonas reinhardtii
2.3e-06
55.8
92
35.9
AT3G62970
Arabidopsis thaliana
5.1e-06
54.7
90
32.2
Pp3c10_4820
Physcomitrella patens
5.1e-06
54.7
91
29.7
Pp3c11_6970
Physcomitrella patens
8.7e-06
53.9
92
30.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (7 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (3 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (3 genes)
Seminavis robusta (4 genes)
Synedra acus (2 genes)
Physcomitrella patens (6 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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